Platinum in PDB 3wua: Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec

All present enzymatic activity of Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec:
3.2.1.17;

The structure of Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec, PDB code: 3wua was solved by R.Mizutani, R.Saiga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.00
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.334, 79.334, 37.763, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 21.7

The binding sites of Platinum atom in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec (pdb code 3wua). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec, PDB code: 3wua:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt201 b:36.7 occ:0.10 O A:ALA10 4.1 18.1 1.0 CB A:ALA10 4.4 18.6 1.0 CA A:ALA10 4.6 18.0 1.0 CD A:LYS13 4.7 32.5 1.0 C A:ALA10 4.8 17.7 1.0 OXT A:LEU129 4.8 68.7 1.0 CA A:LEU129 5.0 59.4 1.0

Platinum binding site 2 out of 3 in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt202 b:37.3 occ:0.15 O A:HOH312 2.7 16.6 1.0 OD1 A:ASN65 2.7 24.8 1.0 O A:HOH339 3.0 31.8 1.0 O A:THR69 3.5 24.3 1.0 CB A:SER72 3.6 35.8 1.0 CG A:ASN65 3.9 22.9 1.0 OG A:SER72 4.0 35.9 1.0 N A:GLY67 4.0 17.1 1.0 N A:THR69 4.1 18.5 1.0 C A:THR69 4.2 23.4 1.0 CA A:GLY67 4.3 18.9 1.0 N A:ASP66 4.5 13.7 1.0 N A:ARG68 4.5 18.9 1.0 CA A:THR69 4.6 20.8 1.0 C A:GLY67 4.6 20.0 1.0 CB A:THR69 4.7 18.8 1.0 CA A:SER72 4.7 36.6 1.0 CA A:ASN65 4.7 17.4 1.0 N A:SER72 4.7 38.6 1.0 OD1 A:ASP66 4.7 14.7 1.0 CB A:ASN65 4.7 19.0 1.0 ND2 A:ASN65 4.9 25.7 1.0

Platinum binding site 3 out of 3 in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Spatiotemporal Development of Soaked Protein Crystal; Derivative 3610 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt203 b:37.3 occ:0.26 CE1 A:HIS15 2.4 29.3 1.0 O A:HOH333 2.6 26.3 1.0 NH1 A:ARG14 2.8 54.2 1.0 ND1 A:HIS15 3.2 30.2 1.0 NE2 A:HIS15 3.4 32.6 1.0 CZ A:ARG14 3.9 50.2 1.0 OD1 A:ASP87 4.3 31.3 1.0 CG A:HIS15 4.5 27.6 1.0 CG1 A:ILE88 4.5 19.6 1.0 CD2 A:HIS15 4.5 29.5 1.0 OG1 A:THR89 4.5 22.1 1.0 NH2 A:ARG14 4.6 50.8 1.0 CB A:ALA11 4.7 19.3 1.0 NE A:ARG14 4.8 46.5 1.0 CD A:ARG14 4.9 39.9 1.0 N A:ILE88 4.9 20.4 1.0

R.Mizutani, Y.Shimizu, R.Saiga, G.Ueno, Y.Nakamura, A.Takeuchi, K.Uesugi, Y.Suzuki. Spatiotemporal Development of Soaked Protein Crystal Sci Rep V. 4 5731 2014.
ISSN: ESSN 2045-2322
PubMed: 25043871
DOI: 10.1038/SREP05731