Chemical elements
  Platinum
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    Catalyst
    PDB 1a2e-2bho
    PDB 2ch8-3un9
    PDB 3vdk-5bna
      3vdk
      4dd4
      4dd6
      4dd7
      4dd9
      4ddb
      4ddc
      4dl4
      4dl5
      4dl6
      4dl7
      4eey
      5bna

Platinum in the structure of Crystal Structure of Human Dna Polymerase Eta in Ternary Complex With A Cisplatin Dna Adduct (pdb 4eey)






The binding sites of Platinum atom in the structure of Crystal Structure of Human Dna Polymerase Eta in Ternary Complex With A Cisplatin Dna Adduct (pdb code 4eey). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 4eey structure was solved by A.UMMAT, O.RECHKOBLIT, R.JAIN, J.R.CHOUDHURY, R.E.JOHNSON, T.D.SILVERSTEIN, A.BUKU, S.LONE, L.PRAKASH, S.PRAKASH, A.K.AGGARWAL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)49.2-2.3
Space groupP61
a (A)98.500
b (A)98.500
c (A)82.603
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)17.8
Rfree (%)23.3


Platinum Binding Sites:

Platinum binding site 1 out of 1 in 4eey


Platinum binding site 1 out of 1 in 4eey
Click to enlarge
stereopicture of Platinum binding site 1 out of 1 in 4eey
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 4eey. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: T: Dg4, T: Dg5, T: Dt6, T: Cpt101, T: Hoh201,

conact list:


AtomAtomDistance (A)
PtN9 T:Dg44.14
PtC8 T:Dg42.90
PtC6 T:Dg43.64
PtC5 T:Dg43.08
PtN7 T:Dg41.97
PtC4 T:Dg44.22
PtOP2 T:Dg44.00
PtO6 T:Dg43.47
PtN9 T:Dg54.20
PtC8 T:Dg52.97
PtC6 T:Dg53.69
PtC5 T:Dg53.12
PtN7 T:Dg52.02
PtC4 T:Dg54.27
PtO6 T:Dg53.48
PtC7 T:Dt64.94
PtO4 T:Dt64.29
PtN1 T:Cpt1011.99
PtN2 T:Cpt1011.97
PtPT1 T:Cpt1010.00
PtO T:Hoh2014.01

interactive model:




© Copyright 2008-2012 by atomistry.com