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Platinum in PDB 4h5a: Dna Octamer D (Gtsegtacac) Partially Crosslinked with Platinum

Protein crystallography data

The structure of Dna Octamer D (Gtsegtacac) Partially Crosslinked with Platinum, PDB code: 4h5a was solved by W.Zhang, G.Coronado, Z.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.08 / 1.42
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.310, 42.310, 24.310, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 23.7

Platinum Binding Sites:

The binding sites of Platinum atom in the Dna Octamer D (Gtsegtacac) Partially Crosslinked with Platinum (pdb code 4h5a). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Dna Octamer D (Gtsegtacac) Partially Crosslinked with Platinum, PDB code: 4h5a:

Platinum binding site 1 out of 1 in 4h5a

Go back to Platinum Binding Sites List in 4h5a
Platinum binding site 1 out of 1 in the Dna Octamer D (Gtsegtacac) Partially Crosslinked with Platinum


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Dna Octamer D (Gtsegtacac) Partially Crosslinked with Platinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:34.0
occ:0.25
N7 A:DG4 2.2 16.0 1.0
O A:HOH220 2.9 37.2 1.0
C8 A:DG4 3.1 17.9 1.0
O A:HOH236 3.2 38.6 1.0
C5 A:DG4 3.3 13.9 1.0
O A:HOH235 3.5 32.6 0.5
O A:HOH212 3.7 25.8 1.0
O6 A:DG4 3.7 16.5 1.0
N7 A:DG3 3.8 20.2 1.0
C6 A:DG4 3.9 13.4 1.0
O A:HOH226 3.9 29.6 1.0
OP2 A:DG4 4.0 26.8 1.0
C5 A:DG3 4.1 16.6 1.0
N4 A:DC5 4.2 15.2 1.0
C8 A:DG3 4.3 18.1 1.0
N9 A:DG4 4.3 17.3 1.0
C4 A:DG4 4.4 14.0 1.0
C6 A:DG3 4.4 13.8 1.0
O6 A:DG3 4.6 16.6 1.0
C4 A:DG3 4.7 15.9 1.0
C5 A:DC5 4.7 15.0 1.0
C4 A:DC5 4.8 14.4 1.0
N9 A:DG3 4.8 18.7 1.0
O A:HOH231 4.9 49.4 1.0
O5' A:DG4 4.9 23.0 1.0

Reference:

W.Zhang, G.Coronado, Z.Huang. Dna Octamer D (Gtsegtacac) Partially Crosslinked with Platinum To Be Published.
Page generated: Wed Dec 16 02:04:46 2020

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