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Platinum in PDB 4i1g: Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums

Protein crystallography data

The structure of Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums, PDB code: 4i1g was solved by W.Zhang, G.Coronado, Z.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.90 / 1.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.368, 42.368, 24.056, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 21.7

Platinum Binding Sites:

The binding sites of Platinum atom in the Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums (pdb code 4i1g). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums, PDB code: 4i1g:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 4i1g

Go back to Platinum Binding Sites List in 4i1g
Platinum binding site 1 out of 2 in the Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:32.0
occ:0.25
N7 A:DG1 2.4 14.6 1.0
C8 A:DG1 3.3 14.4 1.0
C5 A:DG1 3.5 13.6 1.0
O6 A:DG1 3.8 14.9 1.0
C6 A:DG1 4.1 14.0 1.0
C5A A:2ST2 4.3 17.1 1.0
O4 A:2ST2 4.5 14.9 1.0
N9 A:DG1 4.5 14.2 1.0
C4 A:DG1 4.7 14.0 1.0
O5' A:DG1 4.8 18.1 1.0

Platinum binding site 2 out of 2 in 4i1g

Go back to Platinum Binding Sites List in 4i1g
Platinum binding site 2 out of 2 in the Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt102

b:31.9
occ:0.25
N7 A:DG4 2.3 15.1 1.0
C8 A:DG4 3.3 15.5 1.0
C5 A:DG4 3.4 15.1 1.0
O A:HOH201 3.7 28.3 1.0
O6 A:DG4 3.7 15.7 1.0
C6 A:DG4 3.9 14.7 1.0
N7 A:DG3 3.9 17.7 1.0
OP2 A:DG4 4.1 22.0 1.0
N4 A:DC5 4.1 15.2 1.0
C5 A:DG3 4.2 14.6 1.0
C8 A:DG3 4.3 16.8 1.0
N9 A:DG4 4.5 15.1 1.0
C4 A:DG4 4.5 13.9 1.0
C6 A:DG3 4.6 12.9 1.0
O6 A:DG3 4.6 15.1 1.0
C4 A:DC5 4.7 12.8 1.0
C5 A:DC5 4.8 14.8 1.0
C4 A:DG3 4.8 15.5 1.0
N9 A:DG3 4.8 17.8 1.0

Reference:

W.Zhang, G.Coronado, Z.Huang. Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums To Be Published.
Page generated: Wed Dec 16 02:04:47 2020

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