Atomistry » Platinum » PDB 4dd7-4nsj » 4i1g
Atomistry »
  Platinum »
    PDB 4dd7-4nsj »
      4i1g »

Platinum in PDB 4i1g: Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums

Protein crystallography data

The structure of Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums, PDB code: 4i1g was solved by W.Zhang, G.Coronado, Z.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.90 / 1.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.368, 42.368, 24.056, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 21.7

Platinum Binding Sites:

The binding sites of Platinum atom in the Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums (pdb code 4i1g). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums, PDB code: 4i1g:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 4i1g

Go back to Platinum Binding Sites List in 4i1g
Platinum binding site 1 out of 2 in the Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:32.0
occ:0.25
N7 A:DG1 2.4 14.6 1.0
C8 A:DG1 3.3 14.4 1.0
C5 A:DG1 3.5 13.6 1.0
O6 A:DG1 3.8 14.9 1.0
C6 A:DG1 4.1 14.0 1.0
C5A A:2ST2 4.3 17.1 1.0
O4 A:2ST2 4.5 14.9 1.0
N9 A:DG1 4.5 14.2 1.0
C4 A:DG1 4.7 14.0 1.0
O5' A:DG1 4.8 18.1 1.0

Platinum binding site 2 out of 2 in 4i1g

Go back to Platinum Binding Sites List in 4i1g
Platinum binding site 2 out of 2 in the Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt102

b:31.9
occ:0.25
N7 A:DG4 2.3 15.1 1.0
C8 A:DG4 3.3 15.5 1.0
C5 A:DG4 3.4 15.1 1.0
O A:HOH201 3.7 28.3 1.0
O6 A:DG4 3.7 15.7 1.0
C6 A:DG4 3.9 14.7 1.0
N7 A:DG3 3.9 17.7 1.0
OP2 A:DG4 4.1 22.0 1.0
N4 A:DC5 4.1 15.2 1.0
C5 A:DG3 4.2 14.6 1.0
C8 A:DG3 4.3 16.8 1.0
N9 A:DG4 4.5 15.1 1.0
C4 A:DG4 4.5 13.9 1.0
C6 A:DG3 4.6 12.9 1.0
O6 A:DG3 4.6 15.1 1.0
C4 A:DC5 4.7 12.8 1.0
C5 A:DC5 4.8 14.8 1.0
C4 A:DG3 4.8 15.5 1.0
N9 A:DG3 4.8 17.8 1.0

Reference:

W.Zhang, G.Coronado, Z.Huang. Dna Octamer D(Gtsegtacac) Partially Crosslinked with Two Platinums To Be Published.
Page generated: Thu Oct 10 11:03:43 2024

Last articles

Cd in 8X8F
Cd in 9G3B
Cd in 9G3A
Cd in 9G3C
Cd in 9G39
Cd in 9G3U
Ca in 9GVQ
Ca in 9G3R
Ca in 9GVJ
Ca in 9GCO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy