Platinum in PDB 4ll7: Structure of SHE3P Amino Terminus.
Protein crystallography data
The structure of Structure of SHE3P Amino Terminus., PDB code: 4ll7
was solved by
H.Shi,
N.Singh,
F.Esselborn,
G.Blobel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.86 /
2.31
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
28.069,
49.576,
149.950,
89.96,
84.67,
89.98
|
R / Rfree (%)
|
23.1 /
26.4
|
Other elements in 4ll7:
The structure of Structure of SHE3P Amino Terminus. also contains other interesting chemical elements:
Platinum Binding Sites:
The binding sites of Platinum atom in the Structure of SHE3P Amino Terminus.
(pdb code 4ll7). This binding sites where shown within
5.0 Angstroms radius around Platinum atom.
In total 6 binding sites of Platinum where determined in the
Structure of SHE3P Amino Terminus., PDB code: 4ll7:
Jump to Platinum binding site number:
1;
2;
3;
4;
5;
6;
Platinum binding site 1 out
of 6 in 4ll7
Go back to
Platinum Binding Sites List in 4ll7
Platinum binding site 1 out
of 6 in the Structure of SHE3P Amino Terminus.
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 1 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pt211
b:0.5
occ:0.26
|
CG
|
A:MET130
|
2.8
|
61.7
|
1.0
|
CB
|
A:MET130
|
3.1
|
50.1
|
1.0
|
ND2
|
F:ASN95
|
3.2
|
62.2
|
1.0
|
SD
|
A:MET130
|
3.7
|
74.6
|
1.0
|
CG
|
F:ASN95
|
4.0
|
53.0
|
1.0
|
CB
|
F:ASN95
|
4.0
|
48.9
|
1.0
|
CA
|
F:LYS92
|
4.4
|
47.0
|
1.0
|
CG
|
A:LYS127
|
4.6
|
49.3
|
1.0
|
CA
|
A:MET130
|
4.6
|
47.9
|
1.0
|
O
|
C:HOH327
|
4.7
|
42.6
|
1.0
|
N
|
F:LYS92
|
4.7
|
51.8
|
1.0
|
CA
|
A:LYS127
|
4.7
|
10.3
|
1.0
|
C
|
F:LEU91
|
4.9
|
51.7
|
1.0
|
O
|
F:LEU91
|
4.9
|
58.0
|
1.0
|
PT
|
C:PT211
|
4.9
|
1.0
|
0.4
|
OD1
|
F:ASN95
|
5.0
|
50.3
|
1.0
|
|
Platinum binding site 2 out
of 6 in 4ll7
Go back to
Platinum Binding Sites List in 4ll7
Platinum binding site 2 out
of 6 in the Structure of SHE3P Amino Terminus.
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 2 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Pt208
b:1.0
occ:0.22
|
ND2
|
E:ASN95
|
2.7
|
69.7
|
1.0
|
CE
|
B:MET130
|
3.0
|
92.1
|
1.0
|
CB
|
B:MET130
|
3.2
|
76.6
|
1.0
|
CG
|
B:MET130
|
3.3
|
84.4
|
1.0
|
CG
|
E:ASN95
|
3.4
|
65.4
|
1.0
|
CB
|
E:ASN95
|
3.8
|
45.8
|
1.0
|
SD
|
B:MET130
|
4.0
|
90.6
|
1.0
|
O
|
B:GLN126
|
4.0
|
50.0
|
1.0
|
CA
|
B:LYS127
|
4.1
|
39.9
|
1.0
|
OD1
|
E:ASN95
|
4.2
|
72.0
|
1.0
|
C
|
B:GLN126
|
4.5
|
41.1
|
1.0
|
N
|
B:LYS127
|
4.5
|
44.8
|
1.0
|
CA
|
B:MET130
|
4.6
|
67.8
|
1.0
|
O
|
B:HOH315
|
4.6
|
47.6
|
1.0
|
CA
|
E:LYS92
|
4.7
|
61.9
|
1.0
|
CG
|
B:LYS127
|
4.7
|
52.1
|
1.0
|
CB
|
B:LYS127
|
4.8
|
42.3
|
1.0
|
O
|
B:LYS127
|
4.9
|
51.9
|
1.0
|
C
|
B:LYS127
|
4.9
|
45.3
|
1.0
|
O
|
E:HOH302
|
5.0
|
40.9
|
1.0
|
|
Platinum binding site 3 out
of 6 in 4ll7
Go back to
Platinum Binding Sites List in 4ll7
Platinum binding site 3 out
of 6 in the Structure of SHE3P Amino Terminus.
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 3 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Pt211
b:1.0
occ:0.35
|
OD1
|
G:ASN95
|
2.5
|
66.5
|
1.0
|
CG
|
C:MET130
|
2.5
|
65.2
|
1.0
|
CB
|
C:MET130
|
3.1
|
50.6
|
1.0
|
CG
|
G:ASN95
|
3.6
|
68.2
|
1.0
|
SD
|
C:MET130
|
4.0
|
87.0
|
1.0
|
CB
|
G:ASN95
|
4.1
|
56.5
|
1.0
|
CA
|
C:MET130
|
4.6
|
42.7
|
1.0
|
ND2
|
G:ASN95
|
4.7
|
74.4
|
1.0
|
CA
|
C:LYS127
|
4.7
|
24.9
|
1.0
|
CA
|
G:LYS92
|
4.7
|
46.8
|
1.0
|
O
|
C:GLN126
|
4.8
|
33.2
|
1.0
|
O
|
A:HOH303
|
4.8
|
48.7
|
1.0
|
N
|
G:LYS92
|
4.8
|
57.7
|
1.0
|
CG
|
C:LYS127
|
4.9
|
33.7
|
1.0
|
CE
|
C:MET130
|
4.9
|
64.3
|
1.0
|
PT
|
A:PT211
|
4.9
|
0.5
|
0.3
|
CB
|
G:LEU91
|
5.0
|
53.7
|
1.0
|
O
|
G:HOH314
|
5.0
|
54.2
|
1.0
|
|
Platinum binding site 4 out
of 6 in 4ll7
Go back to
Platinum Binding Sites List in 4ll7
Platinum binding site 4 out
of 6 in the Structure of SHE3P Amino Terminus.
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 4 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Pt206
b:0.6
occ:0.25
|
ND2
|
D:ASN95
|
2.9
|
76.5
|
1.0
|
CG
|
H:MET130
|
3.0
|
57.4
|
1.0
|
CB
|
H:MET130
|
3.2
|
52.8
|
1.0
|
CG
|
D:ASN95
|
3.4
|
65.2
|
1.0
|
CB
|
D:ASN95
|
3.9
|
51.1
|
1.0
|
OD1
|
D:ASN95
|
4.0
|
74.0
|
1.0
|
CA
|
H:LYS127
|
4.0
|
21.4
|
1.0
|
O
|
H:GLN126
|
4.3
|
33.6
|
1.0
|
CE
|
H:MET130
|
4.3
|
83.1
|
1.0
|
SD
|
H:MET130
|
4.3
|
71.1
|
1.0
|
CG
|
H:LYS127
|
4.4
|
38.7
|
1.0
|
CB
|
H:LYS127
|
4.6
|
34.7
|
1.0
|
N
|
H:LYS127
|
4.7
|
33.9
|
1.0
|
CA
|
H:MET130
|
4.7
|
41.4
|
1.0
|
C
|
H:GLN126
|
4.7
|
26.2
|
1.0
|
O
|
H:LYS127
|
4.8
|
33.2
|
1.0
|
C
|
H:LYS127
|
4.9
|
25.1
|
1.0
|
O
|
D:HOH316
|
5.0
|
29.8
|
1.0
|
|
Platinum binding site 5 out
of 6 in 4ll7
Go back to
Platinum Binding Sites List in 4ll7
Platinum binding site 5 out
of 6 in the Structure of SHE3P Amino Terminus.
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 5 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Pt207
b:88.1
occ:0.28
|
OD1
|
B:ASN95
|
2.5
|
64.2
|
1.0
|
CG
|
E:MET130
|
2.7
|
64.3
|
1.0
|
CB
|
E:MET130
|
2.8
|
52.9
|
1.0
|
CG
|
B:ASN95
|
3.6
|
49.3
|
1.0
|
CA
|
E:LYS127
|
4.0
|
16.8
|
1.0
|
O
|
E:GLN126
|
4.2
|
28.7
|
1.0
|
CB
|
B:ASN95
|
4.2
|
46.8
|
1.0
|
SD
|
E:MET130
|
4.2
|
74.1
|
1.0
|
CA
|
E:MET130
|
4.3
|
44.8
|
1.0
|
CE
|
E:MET130
|
4.3
|
60.8
|
1.0
|
CG
|
E:LYS127
|
4.5
|
33.2
|
1.0
|
CB
|
E:LYS127
|
4.6
|
35.5
|
1.0
|
N
|
E:LYS127
|
4.6
|
32.4
|
1.0
|
C
|
E:GLN126
|
4.6
|
19.4
|
1.0
|
ND2
|
B:ASN95
|
4.7
|
58.9
|
1.0
|
N
|
E:MET130
|
4.9
|
35.9
|
1.0
|
O
|
E:LYS127
|
4.9
|
39.5
|
1.0
|
O
|
B:HOH331
|
4.9
|
46.9
|
1.0
|
C
|
E:LYS127
|
5.0
|
28.9
|
1.0
|
|
Platinum binding site 6 out
of 6 in 4ll7
Go back to
Platinum Binding Sites List in 4ll7
Platinum binding site 6 out
of 6 in the Structure of SHE3P Amino Terminus.
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 6 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Pt209
b:86.5
occ:0.21
|
OD1
|
C:ASN95
|
2.7
|
65.1
|
1.0
|
CB
|
G:MET130
|
2.9
|
83.3
|
1.0
|
CG
|
G:MET130
|
3.2
|
93.5
|
1.0
|
CE
|
G:MET130
|
3.4
|
92.4
|
1.0
|
O
|
G:GLN126
|
3.7
|
42.6
|
1.0
|
CG
|
C:ASN95
|
3.7
|
63.9
|
1.0
|
CA
|
G:LYS127
|
3.8
|
33.8
|
1.0
|
SD
|
G:MET130
|
4.1
|
96.5
|
1.0
|
CB
|
C:ASN95
|
4.2
|
44.7
|
1.0
|
C
|
G:GLN126
|
4.2
|
33.8
|
1.0
|
CA
|
G:MET130
|
4.3
|
72.0
|
1.0
|
N
|
G:LYS127
|
4.3
|
43.9
|
1.0
|
O
|
G:LYS127
|
4.5
|
56.6
|
1.0
|
C
|
G:LYS127
|
4.6
|
48.7
|
1.0
|
CB
|
G:LYS127
|
4.6
|
42.5
|
1.0
|
CG
|
G:LYS127
|
4.7
|
53.1
|
1.0
|
N
|
G:MET130
|
4.7
|
68.6
|
1.0
|
CG
|
C:LYS92
|
4.8
|
68.7
|
1.0
|
ND2
|
C:ASN95
|
4.8
|
70.4
|
1.0
|
|
Reference:
H.Shi,
N.Singh,
F.Esselborn,
G.Blobel.
Structure of A Myosinbulletadaptor Complex and Pairing By Cargo. Proc.Natl.Acad.Sci.Usa V. 111 E1082 2014.
ISSN: ISSN 0027-8424
PubMed: 24522109
DOI: 10.1073/PNAS.1401428111
Page generated: Thu Oct 10 11:03:48 2024
|