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Platinum in PDB 4ll7: Structure of SHE3P Amino Terminus.

Protein crystallography data

The structure of Structure of SHE3P Amino Terminus., PDB code: 4ll7 was solved by H.Shi, N.Singh, F.Esselborn, G.Blobel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.86 / 2.31
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 28.069, 49.576, 149.950, 89.96, 84.67, 89.98
R / Rfree (%) 23.1 / 26.4

Other elements in 4ll7:

The structure of Structure of SHE3P Amino Terminus. also contains other interesting chemical elements:

Dysprosium (Dy) 30 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the Structure of SHE3P Amino Terminus. (pdb code 4ll7). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 6 binding sites of Platinum where determined in the Structure of SHE3P Amino Terminus., PDB code: 4ll7:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6;

Platinum binding site 1 out of 6 in 4ll7

Go back to Platinum Binding Sites List in 4ll7
Platinum binding site 1 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt211

b:0.5
occ:0.26
CG A:MET130 2.8 61.7 1.0
CB A:MET130 3.1 50.1 1.0
ND2 F:ASN95 3.2 62.2 1.0
SD A:MET130 3.7 74.6 1.0
CG F:ASN95 4.0 53.0 1.0
CB F:ASN95 4.0 48.9 1.0
CA F:LYS92 4.4 47.0 1.0
CG A:LYS127 4.6 49.3 1.0
CA A:MET130 4.6 47.9 1.0
O C:HOH327 4.7 42.6 1.0
N F:LYS92 4.7 51.8 1.0
CA A:LYS127 4.7 10.3 1.0
C F:LEU91 4.9 51.7 1.0
O F:LEU91 4.9 58.0 1.0
PT C:PT211 4.9 1.0 0.4
OD1 F:ASN95 5.0 50.3 1.0

Platinum binding site 2 out of 6 in 4ll7

Go back to Platinum Binding Sites List in 4ll7
Platinum binding site 2 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt208

b:1.0
occ:0.22
ND2 E:ASN95 2.7 69.7 1.0
CE B:MET130 3.0 92.1 1.0
CB B:MET130 3.2 76.6 1.0
CG B:MET130 3.3 84.4 1.0
CG E:ASN95 3.4 65.4 1.0
CB E:ASN95 3.8 45.8 1.0
SD B:MET130 4.0 90.6 1.0
O B:GLN126 4.0 50.0 1.0
CA B:LYS127 4.1 39.9 1.0
OD1 E:ASN95 4.2 72.0 1.0
C B:GLN126 4.5 41.1 1.0
N B:LYS127 4.5 44.8 1.0
CA B:MET130 4.6 67.8 1.0
O B:HOH315 4.6 47.6 1.0
CA E:LYS92 4.7 61.9 1.0
CG B:LYS127 4.7 52.1 1.0
CB B:LYS127 4.8 42.3 1.0
O B:LYS127 4.9 51.9 1.0
C B:LYS127 4.9 45.3 1.0
O E:HOH302 5.0 40.9 1.0

Platinum binding site 3 out of 6 in 4ll7

Go back to Platinum Binding Sites List in 4ll7
Platinum binding site 3 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt211

b:1.0
occ:0.35
OD1 G:ASN95 2.5 66.5 1.0
CG C:MET130 2.5 65.2 1.0
CB C:MET130 3.1 50.6 1.0
CG G:ASN95 3.6 68.2 1.0
SD C:MET130 4.0 87.0 1.0
CB G:ASN95 4.1 56.5 1.0
CA C:MET130 4.6 42.7 1.0
ND2 G:ASN95 4.7 74.4 1.0
CA C:LYS127 4.7 24.9 1.0
CA G:LYS92 4.7 46.8 1.0
O C:GLN126 4.8 33.2 1.0
O A:HOH303 4.8 48.7 1.0
N G:LYS92 4.8 57.7 1.0
CG C:LYS127 4.9 33.7 1.0
CE C:MET130 4.9 64.3 1.0
PT A:PT211 4.9 0.5 0.3
CB G:LEU91 5.0 53.7 1.0
O G:HOH314 5.0 54.2 1.0

Platinum binding site 4 out of 6 in 4ll7

Go back to Platinum Binding Sites List in 4ll7
Platinum binding site 4 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt206

b:0.6
occ:0.25
ND2 D:ASN95 2.9 76.5 1.0
CG H:MET130 3.0 57.4 1.0
CB H:MET130 3.2 52.8 1.0
CG D:ASN95 3.4 65.2 1.0
CB D:ASN95 3.9 51.1 1.0
OD1 D:ASN95 4.0 74.0 1.0
CA H:LYS127 4.0 21.4 1.0
O H:GLN126 4.3 33.6 1.0
CE H:MET130 4.3 83.1 1.0
SD H:MET130 4.3 71.1 1.0
CG H:LYS127 4.4 38.7 1.0
CB H:LYS127 4.6 34.7 1.0
N H:LYS127 4.7 33.9 1.0
CA H:MET130 4.7 41.4 1.0
C H:GLN126 4.7 26.2 1.0
O H:LYS127 4.8 33.2 1.0
C H:LYS127 4.9 25.1 1.0
O D:HOH316 5.0 29.8 1.0

Platinum binding site 5 out of 6 in 4ll7

Go back to Platinum Binding Sites List in 4ll7
Platinum binding site 5 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pt207

b:88.1
occ:0.28
OD1 B:ASN95 2.5 64.2 1.0
CG E:MET130 2.7 64.3 1.0
CB E:MET130 2.8 52.9 1.0
CG B:ASN95 3.6 49.3 1.0
CA E:LYS127 4.0 16.8 1.0
O E:GLN126 4.2 28.7 1.0
CB B:ASN95 4.2 46.8 1.0
SD E:MET130 4.2 74.1 1.0
CA E:MET130 4.3 44.8 1.0
CE E:MET130 4.3 60.8 1.0
CG E:LYS127 4.5 33.2 1.0
CB E:LYS127 4.6 35.5 1.0
N E:LYS127 4.6 32.4 1.0
C E:GLN126 4.6 19.4 1.0
ND2 B:ASN95 4.7 58.9 1.0
N E:MET130 4.9 35.9 1.0
O E:LYS127 4.9 39.5 1.0
O B:HOH331 4.9 46.9 1.0
C E:LYS127 5.0 28.9 1.0

Platinum binding site 6 out of 6 in 4ll7

Go back to Platinum Binding Sites List in 4ll7
Platinum binding site 6 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Structure of SHE3P Amino Terminus. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Pt209

b:86.5
occ:0.21
OD1 C:ASN95 2.7 65.1 1.0
CB G:MET130 2.9 83.3 1.0
CG G:MET130 3.2 93.5 1.0
CE G:MET130 3.4 92.4 1.0
O G:GLN126 3.7 42.6 1.0
CG C:ASN95 3.7 63.9 1.0
CA G:LYS127 3.8 33.8 1.0
SD G:MET130 4.1 96.5 1.0
CB C:ASN95 4.2 44.7 1.0
C G:GLN126 4.2 33.8 1.0
CA G:MET130 4.3 72.0 1.0
N G:LYS127 4.3 43.9 1.0
O G:LYS127 4.5 56.6 1.0
C G:LYS127 4.6 48.7 1.0
CB G:LYS127 4.6 42.5 1.0
CG G:LYS127 4.7 53.1 1.0
N G:MET130 4.7 68.6 1.0
CG C:LYS92 4.8 68.7 1.0
ND2 C:ASN95 4.8 70.4 1.0

Reference:

H.Shi, N.Singh, F.Esselborn, G.Blobel. Structure of A Myosinbulletadaptor Complex and Pairing By Cargo. Proc.Natl.Acad.Sci.Usa V. 111 E1082 2014.
ISSN: ISSN 0027-8424
PubMed: 24522109
DOI: 10.1073/PNAS.1401428111
Page generated: Wed Dec 16 02:04:48 2020

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