Platinum in PDB 4ll7: Structure of SHE3P Amino Terminus.

The structure of Structure of SHE3P Amino Terminus., PDB code: 4ll7 was solved by H.Shi, N.Singh, F.Esselborn, G.Blobel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.86 / 2.31
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	28.069, 49.576, 149.950, 89.96, 84.67, 89.98
R / Rfree (%)	23.1 / 26.4

The structure of Structure of SHE3P Amino Terminus. also contains other interesting chemical elements:

Dysprosium

(Dy)

30 atoms

The binding sites of Platinum atom in the Structure of SHE3P Amino Terminus. (pdb code 4ll7). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 6 binding sites of Platinum where determined in the Structure of SHE3P Amino Terminus., PDB code: 4ll7:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6;

Platinum binding site 1 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structure of SHE3P Amino Terminus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt211 b:0.5 occ:0.26 CG A:MET130 2.8 61.7 1.0 CB A:MET130 3.1 50.1 1.0 ND2 F:ASN95 3.2 62.2 1.0 SD A:MET130 3.7 74.6 1.0 CG F:ASN95 4.0 53.0 1.0 CB F:ASN95 4.0 48.9 1.0 CA F:LYS92 4.4 47.0 1.0 CG A:LYS127 4.6 49.3 1.0 CA A:MET130 4.6 47.9 1.0 O C:HOH327 4.7 42.6 1.0 N F:LYS92 4.7 51.8 1.0 CA A:LYS127 4.7 10.3 1.0 C F:LEU91 4.9 51.7 1.0 O F:LEU91 4.9 58.0 1.0 PT C:PT211 4.9 1.0 0.4 OD1 F:ASN95 5.0 50.3 1.0

Platinum binding site 2 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structure of SHE3P Amino Terminus. within 5.0Å range: probe atom residue distance (Å) B Occ B:Pt208 b:1.0 occ:0.22 ND2 E:ASN95 2.7 69.7 1.0 CE B:MET130 3.0 92.1 1.0 CB B:MET130 3.2 76.6 1.0 CG B:MET130 3.3 84.4 1.0 CG E:ASN95 3.4 65.4 1.0 CB E:ASN95 3.8 45.8 1.0 SD B:MET130 4.0 90.6 1.0 O B:GLN126 4.0 50.0 1.0 CA B:LYS127 4.1 39.9 1.0 OD1 E:ASN95 4.2 72.0 1.0 C B:GLN126 4.5 41.1 1.0 N B:LYS127 4.5 44.8 1.0 CA B:MET130 4.6 67.8 1.0 O B:HOH315 4.6 47.6 1.0 CA E:LYS92 4.7 61.9 1.0 CG B:LYS127 4.7 52.1 1.0 CB B:LYS127 4.8 42.3 1.0 O B:LYS127 4.9 51.9 1.0 C B:LYS127 4.9 45.3 1.0 O E:HOH302 5.0 40.9 1.0

Platinum binding site 3 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Structure of SHE3P Amino Terminus. within 5.0Å range: probe atom residue distance (Å) B Occ C:Pt211 b:1.0 occ:0.35 OD1 G:ASN95 2.5 66.5 1.0 CG C:MET130 2.5 65.2 1.0 CB C:MET130 3.1 50.6 1.0 CG G:ASN95 3.6 68.2 1.0 SD C:MET130 4.0 87.0 1.0 CB G:ASN95 4.1 56.5 1.0 CA C:MET130 4.6 42.7 1.0 ND2 G:ASN95 4.7 74.4 1.0 CA C:LYS127 4.7 24.9 1.0 CA G:LYS92 4.7 46.8 1.0 O C:GLN126 4.8 33.2 1.0 O A:HOH303 4.8 48.7 1.0 N G:LYS92 4.8 57.7 1.0 CG C:LYS127 4.9 33.7 1.0 CE C:MET130 4.9 64.3 1.0 PT A:PT211 4.9 0.5 0.3 CB G:LEU91 5.0 53.7 1.0 O G:HOH314 5.0 54.2 1.0

Platinum binding site 4 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Structure of SHE3P Amino Terminus. within 5.0Å range: probe atom residue distance (Å) B Occ D:Pt206 b:0.6 occ:0.25 ND2 D:ASN95 2.9 76.5 1.0 CG H:MET130 3.0 57.4 1.0 CB H:MET130 3.2 52.8 1.0 CG D:ASN95 3.4 65.2 1.0 CB D:ASN95 3.9 51.1 1.0 OD1 D:ASN95 4.0 74.0 1.0 CA H:LYS127 4.0 21.4 1.0 O H:GLN126 4.3 33.6 1.0 CE H:MET130 4.3 83.1 1.0 SD H:MET130 4.3 71.1 1.0 CG H:LYS127 4.4 38.7 1.0 CB H:LYS127 4.6 34.7 1.0 N H:LYS127 4.7 33.9 1.0 CA H:MET130 4.7 41.4 1.0 C H:GLN126 4.7 26.2 1.0 O H:LYS127 4.8 33.2 1.0 C H:LYS127 4.9 25.1 1.0 O D:HOH316 5.0 29.8 1.0

Platinum binding site 5 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Structure of SHE3P Amino Terminus. within 5.0Å range: probe atom residue distance (Å) B Occ E:Pt207 b:88.1 occ:0.28 OD1 B:ASN95 2.5 64.2 1.0 CG E:MET130 2.7 64.3 1.0 CB E:MET130 2.8 52.9 1.0 CG B:ASN95 3.6 49.3 1.0 CA E:LYS127 4.0 16.8 1.0 O E:GLN126 4.2 28.7 1.0 CB B:ASN95 4.2 46.8 1.0 SD E:MET130 4.2 74.1 1.0 CA E:MET130 4.3 44.8 1.0 CE E:MET130 4.3 60.8 1.0 CG E:LYS127 4.5 33.2 1.0 CB E:LYS127 4.6 35.5 1.0 N E:LYS127 4.6 32.4 1.0 C E:GLN126 4.6 19.4 1.0 ND2 B:ASN95 4.7 58.9 1.0 N E:MET130 4.9 35.9 1.0 O E:LYS127 4.9 39.5 1.0 O B:HOH331 4.9 46.9 1.0 C E:LYS127 5.0 28.9 1.0

Platinum binding site 6 out of 6 in the Structure of SHE3P Amino Terminus.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Structure of SHE3P Amino Terminus. within 5.0Å range: probe atom residue distance (Å) B Occ G:Pt209 b:86.5 occ:0.21 OD1 C:ASN95 2.7 65.1 1.0 CB G:MET130 2.9 83.3 1.0 CG G:MET130 3.2 93.5 1.0 CE G:MET130 3.4 92.4 1.0 O G:GLN126 3.7 42.6 1.0 CG C:ASN95 3.7 63.9 1.0 CA G:LYS127 3.8 33.8 1.0 SD G:MET130 4.1 96.5 1.0 CB C:ASN95 4.2 44.7 1.0 C G:GLN126 4.2 33.8 1.0 CA G:MET130 4.3 72.0 1.0 N G:LYS127 4.3 43.9 1.0 O G:LYS127 4.5 56.6 1.0 C G:LYS127 4.6 48.7 1.0 CB G:LYS127 4.6 42.5 1.0 CG G:LYS127 4.7 53.1 1.0 N G:MET130 4.7 68.6 1.0 CG C:LYS92 4.8 68.7 1.0 ND2 C:ASN95 4.8 70.4 1.0

H.Shi, N.Singh, F.Esselborn, G.Blobel. Structure of A Myosinbulletadaptor Complex and Pairing By Cargo. Proc.Natl.Acad.Sci.Usa V. 111 E1082 2014.
ISSN: ISSN 0027-8424
PubMed: 24522109
DOI: 10.1073/PNAS.1401428111