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Platinum in PDB 4lw9: Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg

Protein crystallography data

The structure of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg, PDB code: 4lw9 was solved by F.S.Vago, K.Raghunathan, J.C.Jens, W.J.Wedemeyer, M.Bagdasarian, J.S.Brunzelle, D.N.Arvidson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.54 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 88.610, 70.015, 131.544, 90.00, 103.29, 90.00
R / Rfree (%) 20.2 / 24.5

Other elements in 4lw9:

The structure of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg also contains other interesting chemical elements:

Zinc (Zn) 32 atoms
Calcium (Ca) 14 atoms
Chlorine (Cl) 9 atoms
Sodium (Na) 6 atoms

Platinum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Platinum atom in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg (pdb code 4lw9). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 12 binding sites of Platinum where determined in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg, PDB code: 4lw9:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Platinum binding site 1 out of 12 in 4lw9

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Platinum binding site 1 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt208

b:27.5
occ:0.25
CE A:MET49 2.0 30.4 1.0
CG A:MET49 2.0 27.0 1.0
SD A:MET49 2.5 31.3 1.0
CB A:MET49 3.3 22.0 1.0
NE A:ARG80 4.1 32.6 1.0
CD A:ARG80 4.3 31.1 1.0
CD1 A:TYR84 4.4 21.6 1.0
CZ A:ARG80 4.5 35.4 1.0
CA A:MET49 4.7 19.7 1.0
CE1 A:TYR84 4.9 19.5 1.0
NH2 A:ARG80 5.0 35.9 1.0
O B:ALA31 5.0 25.7 1.0

Platinum binding site 2 out of 12 in 4lw9

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Platinum binding site 2 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt206

b:37.4
occ:0.25
NH1 B:ARG80 2.0 40.1 1.0
CE B:MET49 2.0 33.0 1.0
CG B:MET49 2.0 27.9 1.0
SD B:MET49 2.5 31.9 1.0
CZ B:ARG80 3.0 40.0 1.0
CL B:CL207 3.1 33.3 0.2
CB B:MET49 3.3 23.1 1.0
NH2 B:ARG80 3.4 40.6 1.0
NE B:ARG80 4.0 38.3 1.0
CD1 B:TYR84 4.3 24.7 1.0
CD B:ARG80 4.4 36.8 1.0
CA B:MET49 4.6 19.8 1.0
CE1 B:TYR84 4.8 24.9 1.0

Platinum binding site 3 out of 12 in 4lw9

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Platinum binding site 3 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt205

b:39.0
occ:0.25
CG C:MET49 2.0 33.5 1.0
SD C:MET49 2.6 36.4 1.0
CB C:MET49 3.3 28.8 1.0
CE C:MET49 4.0 35.8 1.0
NE C:ARG80 4.0 46.2 1.0
CD1 C:TYR84 4.4 26.6 1.0
CD C:ARG80 4.5 44.0 1.0
CA C:MET49 4.7 26.8 1.0
CZ C:ARG80 4.7 48.1 1.0
CE1 C:TYR84 4.8 27.4 1.0
NH2 C:ARG80 4.9 49.2 1.0
O D:ALA31 5.0 30.5 1.0

Platinum binding site 4 out of 12 in 4lw9

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Platinum binding site 4 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt206

b:37.8
occ:0.25
NH1 D:ARG80 2.0 41.6 1.0
CE D:MET49 2.0 35.4 1.0
CG D:MET49 2.4 29.3 1.0
SD D:MET49 2.7 34.2 1.0
CZ D:ARG80 3.1 42.8 1.0
CL D:CL207 3.1 34.6 0.2
CB D:MET49 3.5 25.7 1.0
NH2 D:ARG80 3.6 43.6 1.0
O D:HOH340 3.7 46.1 1.0
NE D:ARG80 4.1 42.0 1.0
CD1 D:TYR84 4.3 28.8 1.0
CD D:ARG80 4.5 42.0 1.0
CE1 D:TYR84 4.8 28.4 1.0
CA D:MET49 4.8 22.8 1.0

Platinum binding site 5 out of 12 in 4lw9

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Platinum binding site 5 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pt206

b:32.5
occ:0.25
SD E:MET49 2.3 38.8 1.0
CL E:CL207 2.4 34.5 0.2
CL E:CL208 2.4 30.9 0.2
CZ E:ARG80 2.8 51.1 1.0
NH2 E:ARG80 3.0 51.1 1.0
NH1 E:ARG80 3.0 51.4 1.0
CE E:MET49 3.2 37.6 1.0
CG E:MET49 3.3 36.5 1.0
NE E:ARG80 3.4 50.6 1.0
CB E:MET49 3.5 35.1 1.0
CD E:ARG80 4.2 49.7 1.0
CD1 E:TYR84 4.4 35.0 1.0
CA E:MET49 4.8 33.9 1.0
CE1 E:TYR84 4.8 35.7 1.0

Platinum binding site 6 out of 12 in 4lw9

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Platinum binding site 6 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Pt204

b:46.2
occ:0.25
CE F:MET49 2.0 40.2 1.0
CG F:MET49 2.5 34.4 1.0
SD F:MET49 3.0 38.5 1.0
NH1 F:ARG80 3.1 52.8 1.0
CZ F:ARG80 3.3 52.5 1.0
CB F:MET49 3.4 31.1 1.0
NH2 F:ARG80 3.5 52.4 1.0
NE F:ARG80 4.0 51.9 1.0
O F:HOH329 4.2 51.5 1.0
CD1 F:TYR84 4.4 38.0 1.0
CD F:ARG80 4.5 51.4 1.0
CA F:MET49 4.8 29.1 1.0
CE1 F:TYR84 4.9 38.3 1.0

Platinum binding site 7 out of 12 in 4lw9

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Platinum binding site 7 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 7 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Pt205

b:30.0
occ:0.25
NH1 I:ARG80 2.0 37.1 1.0
CE I:MET49 2.0 33.4 1.0
CG I:MET49 2.0 27.9 1.0
SD I:MET49 2.3 33.3 1.0
CZ I:ARG80 3.1 39.1 1.0
CB I:MET49 3.2 23.9 1.0
NH2 I:ARG80 3.6 40.1 1.0
O J:HOH349 4.1 41.9 1.0
NE I:ARG80 4.2 38.6 1.0
CA I:MET49 4.5 21.3 1.0
CD I:ARG80 4.6 38.7 1.0
CD1 I:TYR84 4.7 23.7 1.0

Platinum binding site 8 out of 12 in 4lw9

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Platinum binding site 8 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 8 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Pt204

b:52.7
occ:0.25
CE J:MET49 2.0 48.7 1.0
CG J:MET49 2.2 43.1 1.0
SD J:MET49 2.3 47.5 1.0
CB J:MET49 3.4 40.9 1.0
NE J:ARG80 3.5 58.6 1.0
NH2 J:ARG80 3.7 58.9 1.0
CZ J:ARG80 3.8 58.8 1.0
CD1 J:TYR84 4.2 38.4 1.0
CD J:ARG80 4.3 57.8 1.0
CE1 J:TYR84 4.7 38.8 1.0
NH1 J:ARG80 4.7 58.8 1.0
CA J:MET49 4.7 38.3 1.0

Platinum binding site 9 out of 12 in 4lw9

Go back to Platinum Binding Sites List in 4lw9
Platinum binding site 9 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 9 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Pt207

b:46.0
occ:0.25
CE K:MET49 2.0 43.5 1.0
CG K:MET49 2.0 39.1 1.0
SD K:MET49 2.3 42.6 1.0
CB K:MET49 3.2 35.1 1.0
CL L:CL206 3.7 30.7 0.2
O L:HOH360 3.9 48.2 1.0
CD1 K:TYR84 4.5 36.7 1.0
CA K:MET49 4.5 31.2 1.0
O L:ALA31 4.8 36.7 1.0
CE1 K:TYR84 4.9 36.3 1.0

Platinum binding site 10 out of 12 in 4lw9

Go back to Platinum Binding Sites List in 4lw9
Platinum binding site 10 out of 12 in the Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 10 of Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Pt205

b:38.1
occ:0.25
CE L:MET49 2.0 37.2 1.0
CG L:MET49 2.0 33.5 1.0
SD L:MET49 2.6 36.3 1.0
NH1 L:ARG80 2.6 45.9 1.0
CZ L:ARG80 3.2 46.3 1.0
CB L:MET49 3.3 29.5 1.0
NH2 L:ARG80 3.5 46.5 1.0
NE L:ARG80 4.1 45.2 1.0
CD1 L:TYR84 4.3 30.9 1.0
CD L:ARG80 4.6 43.6 1.0
CA L:MET49 4.6 27.5 1.0
CE1 L:TYR84 4.8 30.2 1.0

Reference:

F.S.Vago, K.Raghunathan, J.C.Jens, W.J.Wedemeyer, M.Bagdasarian, J.S.Brunzelle, D.N.Arvidson. Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg To Be Published.
Page generated: Wed Dec 16 02:04:50 2020

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