Atomistry » Platinum » PDB 4dd7-4nsj » 4nsg
Atomistry »
  Platinum »
    PDB 4dd7-4nsj »
      4nsg »

Platinum in PDB 4nsg: Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A

Enzymatic activity of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A

All present enzymatic activity of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A:
3.2.1.17;

Protein crystallography data

The structure of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A, PDB code: 4nsg was solved by S.W.M.Tanley, K.Diederichs, L.M.J.Kroon-Batenburg, C.Levy, A.M.M.Schreurs, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.42 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.377, 78.377, 37.213, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 27.1

Other elements in 4nsg:

The structure of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A also contains other interesting chemical elements:

Bromine (Br) 9 atoms
Sodium (Na) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A (pdb code 4nsg). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A, PDB code: 4nsg:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 4nsg

Go back to Platinum Binding Sites List in 4nsg
Platinum binding site 1 out of 2 in the Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt220

b:18.4
occ:0.94
ND1 A:HIS15 2.2 16.1 1.0
BR A:BR204 2.5 22.1 0.9
BR A:BR203 2.5 18.5 0.9
CE1 A:HIS15 3.1 16.0 1.0
CG A:HIS15 3.1 16.0 1.0
CB A:HIS15 3.4 16.0 1.0
CA A:HIS15 3.5 16.0 1.0
O A:HOH303 4.1 22.4 1.0
NE2 A:HIS15 4.2 15.9 1.0
CD2 A:HIS15 4.2 15.9 1.0
O A:HIS15 4.2 16.4 1.0
C A:HIS15 4.3 16.2 1.0
N A:HIS15 4.6 15.8 1.0
CG2 A:THR89 4.7 12.5 1.0
O A:ARG14 4.8 15.8 1.0
OG1 A:THR89 4.8 12.6 1.0

Platinum binding site 2 out of 2 in 4nsg

Go back to Platinum Binding Sites List in 4nsg
Platinum binding site 2 out of 2 in the Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt221

b:43.3
occ:0.28
NH1 A:ARG14 2.1 17.8 1.0
BR A:BR201 2.3 11.3 0.4
NE2 A:HIS15 2.7 15.9 1.0
CZ A:ARG14 3.3 17.5 1.0
CE1 A:HIS15 3.5 16.0 1.0
CD2 A:HIS15 3.8 15.9 1.0
O A:HOH369 3.8 28.7 1.0
NH2 A:ARG14 3.9 17.9 1.0
NE A:ARG14 4.2 17.1 1.0
OD2 A:ASP87 4.3 13.8 1.0
OD1 A:ASP87 4.3 13.5 1.0
CD A:ARG14 4.4 16.7 1.0
CG A:ASP87 4.4 13.4 1.0
ND1 A:HIS15 4.7 16.1 1.0
OG1 A:THR89 4.8 12.6 1.0
CG A:HIS15 4.8 16.0 1.0
N A:ILE88 5.0 12.7 1.0
CG1 A:ILE88 5.0 12.7 1.0
CB A:ALA11 5.0 12.0 1.0

Reference:

S.W.Tanley, K.Diederichs, L.M.Kroon-Batenburg, C.Levy, A.M.Schreurs, J.R.Helliwell. Carboplatin Binding to Histidine. Acta Crystallogr F Struct V. 70 1135 2014BIOL Commun.
PubMed: 25195881
DOI: 10.1107/S2053230X14016161
Page generated: Thu Oct 10 11:05:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy