Atomistry » Platinum » PDB 4dd7-4nsj » 4nsh
Atomistry »
  Platinum »
    PDB 4dd7-4nsj »
      4nsh »

Platinum in PDB 4nsh: Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6

Enzymatic activity of Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6

All present enzymatic activity of Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6:
3.2.1.17;

Protein crystallography data

The structure of Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6, PDB code: 4nsh was solved by S.W.M.Tanley, K.Diederichs, L.M.J.Kroon-Batenburg, C.Levy, A.M.M.Schreurs, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.71 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.085, 77.085, 37.143, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 26.2

Platinum Binding Sites:

The binding sites of Platinum atom in the Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6 (pdb code 4nsh). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6, PDB code: 4nsh:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 4nsh

Go back to Platinum Binding Sites List in 4nsh
Platinum binding site 1 out of 2 in the Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt207

b:54.2
occ:0.40
PT1 A:QPT207 0.0 54.2 0.4
O1 A:QPT207 2.0 55.8 1.0
N1 A:QPT207 2.0 47.2 1.0
NH1 A:ARG14 2.4 41.2 1.0
NE2 A:HIS15 2.8 28.2 1.0
C1 A:QPT207 2.9 49.7 1.0
CD2 A:HIS15 3.5 27.4 1.0
CZ A:ARG14 3.7 40.2 1.0
CE1 A:HIS15 3.8 28.9 1.0
OD1 A:ASP87 4.3 27.9 1.0
CD A:ARG14 4.4 35.3 1.0
NE A:ARG14 4.4 38.0 1.0
NH2 A:ARG14 4.5 41.5 1.0
CB A:ALA11 4.6 18.8 1.0
CG1 A:ILE88 4.7 21.1 1.0
CG A:HIS15 4.8 27.3 1.0
OG1 A:THR89 4.8 21.2 1.0
ND1 A:HIS15 4.9 28.3 1.0
N A:ILE88 5.0 21.4 1.0

Platinum binding site 2 out of 2 in 4nsh

Go back to Platinum Binding Sites List in 4nsh
Platinum binding site 2 out of 2 in the Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Carboplatin Binding to Hewl in 0.2M NH4SO4, 0.1M Naac in 25% Peg 4000 at pH 4.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt209

b:41.7
occ:0.49
PT1 A:QPT209 0.0 41.7 0.5
O2 A:QPT209 2.0 42.1 1.0
O1 A:QPT209 2.0 40.5 1.0
N2 A:QPT209 2.0 43.1 1.0
ND1 A:HIS15 2.2 28.3 1.0
C2 A:QPT209 3.0 42.3 1.0
CE1 A:HIS15 3.1 28.9 1.0
CG A:HIS15 3.2 27.3 1.0
CB A:HIS15 3.5 26.5 1.0
CA A:HIS15 3.7 26.8 1.0
O A:HIS15 4.1 25.8 1.0
NE2 A:HIS15 4.3 28.2 1.0
CD2 A:HIS15 4.3 27.4 1.0
C A:HIS15 4.4 26.7 1.0
O A:HOH365 4.4 39.2 1.0
CG2 A:THR89 4.7 21.3 1.0
OG1 A:THR89 4.7 21.2 1.0
N A:HIS15 4.8 26.7 1.0
O A:ARG14 4.9 27.4 1.0

Reference:

S.W.Tanley, K.Diederichs, L.M.Kroon-Batenburg, C.Levy, A.M.Schreurs, J.R.Helliwell. Carboplatin Binding to Histidine. Acta Crystallogr F Struct V. 70 1135 2014BIOL Commun.
PubMed: 25195881
DOI: 10.1107/S2053230X14016161
Page generated: Thu Oct 10 11:05:46 2024

Last articles

Zn in 3HKQ
Zn in 3HKA
Zn in 3HKO
Zn in 3HKN
Zn in 3HK8
Zn in 3HK5
Zn in 3HJT
Zn in 3HJW
Zn in 3HGZ
Zn in 3HI2
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy