Atomistry » Platinum » PDB 4dd7-4nsj » 4nsi
Atomistry »
  Platinum »
    PDB 4dd7-4nsj »
      4nsi »

Platinum in PDB 4nsi: Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6

Enzymatic activity of Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6

All present enzymatic activity of Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6:
3.2.1.17;

Protein crystallography data

The structure of Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6, PDB code: 4nsi was solved by S.W.M.Tanley, K.Diederichs, L.M.J.Kroon-Batenburg, C.Levy, A.M.M.Schreurs, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.31 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.713, 77.713, 36.840, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 28.5

Platinum Binding Sites:

The binding sites of Platinum atom in the Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6 (pdb code 4nsi). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6, PDB code: 4nsi:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 4nsi

Go back to Platinum Binding Sites List in 4nsi
Platinum binding site 1 out of 2 in the Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt204

b:52.6
occ:0.46
NH2 A:ARG14 2.5 53.1 1.0
NE2 A:HIS15 2.6 31.6 1.0
CE1 A:HIS15 3.1 31.2 1.0
CZ A:ARG14 3.4 49.4 1.0
NE A:ARG14 3.5 49.0 1.0
CD2 A:HIS15 3.8 33.1 1.0
OD1 A:ASP87 4.0 37.5 1.0
ND1 A:HIS15 4.4 31.1 1.0
OG1 A:THR89 4.4 29.8 1.0
O A:HOH327 4.5 28.9 1.0
NH1 A:ARG14 4.6 48.5 1.0
CG1 A:ILE88 4.7 29.7 1.0
CG A:ASP87 4.7 34.5 1.0
CG A:HIS15 4.7 33.1 1.0
CB A:ALA11 4.8 26.6 1.0
O A:HOH314 4.8 38.6 1.0
N A:ILE88 4.8 29.9 1.0
CD A:ARG14 4.9 47.8 1.0

Platinum binding site 2 out of 2 in 4nsi

Go back to Platinum Binding Sites List in 4nsi
Platinum binding site 2 out of 2 in the Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Carboplatin Binding to Hewl in 20% Propanol, 20% Peg 4000 at PH5.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt205

b:55.8
occ:0.65
PT1 A:QPT205 0.0 55.8 0.7
O1 A:QPT205 2.0 45.5 1.0
O2 A:QPT205 2.0 56.6 1.0
N2 A:QPT205 2.0 55.2 1.0
ND1 A:HIS15 2.5 31.1 1.0
C1 A:QPT205 2.9 42.4 1.0
C2 A:QPT205 3.0 55.0 1.0
CG A:HIS15 3.4 33.1 1.0
CE1 A:HIS15 3.5 31.2 1.0
CA A:HIS15 3.5 34.8 1.0
CB A:HIS15 3.6 34.1 1.0
O4 A:QPT205 3.9 40.6 1.0
O3 A:QPT205 4.2 56.3 1.0
O A:HIS15 4.2 32.1 1.0
C A:HIS15 4.3 34.4 1.0
O A:ARG14 4.3 35.3 1.0
N A:HIS15 4.6 36.0 1.0
CD2 A:HIS15 4.6 33.1 1.0
NE2 A:HIS15 4.6 31.6 1.0
OG1 A:THR89 4.6 29.8 1.0
C A:ARG14 4.8 36.7 1.0
NZ A:LYS96 4.9 29.4 1.0

Reference:

S.W.Tanley, K.Diederichs, L.M.Kroon-Batenburg, C.Levy, A.M.Schreurs, J.R.Helliwell. Carboplatin Binding to Histidine. Acta Crystallogr F Struct V. 70 1135 2014BIOL Commun.
PubMed: 25195881
DOI: 10.1107/S2053230X14016161
Page generated: Thu Oct 10 11:05:47 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy