Atomistry » Platinum » PDB 4omb-5djl » 4omb
Atomistry »
  Platinum »
    PDB 4omb-5djl »
      4omb »

Platinum in PDB 4omb: Phosphate Binding Protein

Protein crystallography data

The structure of Phosphate Binding Protein, PDB code: 4omb was solved by A.Neznansky, Y.Opatowsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 122.20 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.444, 148.092, 216.452, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.6

Platinum Binding Sites:

The binding sites of Platinum atom in the Phosphate Binding Protein (pdb code 4omb). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 4 binding sites of Platinum where determined in the Phosphate Binding Protein, PDB code: 4omb:
Jump to Platinum binding site number: 1; 2; 3; 4;

Platinum binding site 1 out of 4 in 4omb

Go back to Platinum Binding Sites List in 4omb
Platinum binding site 1 out of 4 in the Phosphate Binding Protein


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Phosphate Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt402

b:85.0
occ:1.00
O A:HOH615 2.4 33.7 1.0
CE A:MET57 2.6 39.2 1.0
SD A:MET57 2.7 57.5 1.0
CG A:MET57 3.1 28.9 1.0
CB A:MET57 4.6 21.7 1.0

Platinum binding site 2 out of 4 in 4omb

Go back to Platinum Binding Sites List in 4omb
Platinum binding site 2 out of 4 in the Phosphate Binding Protein


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Phosphate Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt402

b:0.5
occ:1.00
SD B:MET57 2.4 87.5 1.0
CG B:MET57 3.0 42.4 1.0
CE B:MET57 3.1 53.5 1.0
CB B:MET57 4.5 30.2 1.0
CE B:LYS303 4.9 99.1 1.0

Platinum binding site 3 out of 4 in 4omb

Go back to Platinum Binding Sites List in 4omb
Platinum binding site 3 out of 4 in the Phosphate Binding Protein


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Phosphate Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt402

b:0.9
occ:1.00
SD C:MET57 2.5 70.7 1.0
NZ C:LYS303 2.9 84.7 1.0
CG C:MET57 3.0 43.8 1.0
CE C:MET57 3.4 44.7 1.0
CE C:LYS303 4.2 80.2 1.0
CB C:MET57 4.5 35.6 1.0

Platinum binding site 4 out of 4 in 4omb

Go back to Platinum Binding Sites List in 4omb
Platinum binding site 4 out of 4 in the Phosphate Binding Protein


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Phosphate Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt402

b:0.1
occ:1.00
SD D:MET57 2.5 88.0 1.0
NZ D:LYS303 2.7 62.1 1.0
CG D:MET57 3.1 49.8 1.0
CE D:MET57 3.3 53.7 1.0
CE D:LYS303 3.9 63.3 1.0
CB D:MET57 4.5 42.5 1.0

Reference:

A.Neznansky, I.Blus-Kadosh, G.Yerushalmi, E.Banin, Y.Opatowsky. The Pseudomonas Aeruginosa Phosphate Transport Protein Psts Plays A Phosphate-Independent Role in Biofilm Formation. Faseb J. V. 28 5223 2014.
ISSN: ISSN 0892-6638
PubMed: 25223609
DOI: 10.1096/FJ.14-258293
Page generated: Thu Oct 10 11:07:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy