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Platinum in PDB 4omb: Phosphate Binding Protein

Protein crystallography data

The structure of Phosphate Binding Protein, PDB code: 4omb was solved by A.Neznansky, Y.Opatowsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 122.20 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.444, 148.092, 216.452, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.6

Platinum Binding Sites:

The binding sites of Platinum atom in the Phosphate Binding Protein (pdb code 4omb). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 4 binding sites of Platinum where determined in the Phosphate Binding Protein, PDB code: 4omb:
Jump to Platinum binding site number: 1; 2; 3; 4;

Platinum binding site 1 out of 4 in 4omb

Go back to Platinum Binding Sites List in 4omb
Platinum binding site 1 out of 4 in the Phosphate Binding Protein


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Phosphate Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt402

b:85.0
occ:1.00
O A:HOH615 2.4 33.7 1.0
CE A:MET57 2.6 39.2 1.0
SD A:MET57 2.7 57.5 1.0
CG A:MET57 3.1 28.9 1.0
CB A:MET57 4.6 21.7 1.0

Platinum binding site 2 out of 4 in 4omb

Go back to Platinum Binding Sites List in 4omb
Platinum binding site 2 out of 4 in the Phosphate Binding Protein


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Phosphate Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt402

b:0.5
occ:1.00
SD B:MET57 2.4 87.5 1.0
CG B:MET57 3.0 42.4 1.0
CE B:MET57 3.1 53.5 1.0
CB B:MET57 4.5 30.2 1.0
CE B:LYS303 4.9 99.1 1.0

Platinum binding site 3 out of 4 in 4omb

Go back to Platinum Binding Sites List in 4omb
Platinum binding site 3 out of 4 in the Phosphate Binding Protein


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Phosphate Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt402

b:0.9
occ:1.00
SD C:MET57 2.5 70.7 1.0
NZ C:LYS303 2.9 84.7 1.0
CG C:MET57 3.0 43.8 1.0
CE C:MET57 3.4 44.7 1.0
CE C:LYS303 4.2 80.2 1.0
CB C:MET57 4.5 35.6 1.0

Platinum binding site 4 out of 4 in 4omb

Go back to Platinum Binding Sites List in 4omb
Platinum binding site 4 out of 4 in the Phosphate Binding Protein


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Phosphate Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt402

b:0.1
occ:1.00
SD D:MET57 2.5 88.0 1.0
NZ D:LYS303 2.7 62.1 1.0
CG D:MET57 3.1 49.8 1.0
CE D:MET57 3.3 53.7 1.0
CE D:LYS303 3.9 63.3 1.0
CB D:MET57 4.5 42.5 1.0

Reference:

A.Neznansky, I.Blus-Kadosh, G.Yerushalmi, E.Banin, Y.Opatowsky. The Pseudomonas Aeruginosa Phosphate Transport Protein Psts Plays A Phosphate-Independent Role in Biofilm Formation. Faseb J. V. 28 5223 2014.
ISSN: ISSN 0892-6638
PubMed: 25223609
DOI: 10.1096/FJ.14-258293
Page generated: Wed Dec 16 02:04:58 2020

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