Platinum in PDB 4pgw: Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad

The structure of Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad, PDB code: 4pgw was solved by Q.Liu, Y.Chang, W.A.Hendrickson, New York Consortium On Membrane Proteinstructure (Nycomps), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.77 / 3.60
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	47.640, 161.750, 123.830, 90.00, 90.00, 90.00
R / Rfree (%)	28.4 / 33

The binding sites of Platinum atom in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad (pdb code 4pgw). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad, PDB code: 4pgw:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt301 b:0.0 occ:1.00 SD A:MET188 2.1 0.2 1.0 CE A:MET188 2.4 0.1 1.0 CG A:MET188 3.9 0.5 1.0 CB A:MET188 4.7 0.0 1.0 CA A:MET188 4.9 0.6 1.0 OG A:SER191 5.0 0.8 1.0

Platinum binding site 2 out of 3 in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt302 b:0.1 occ:0.66 CE A:MET13 2.3 91.6 1.0 SD A:MET13 2.3 92.1 0.7 CB A:MET13 2.3 97.0 1.0 CG A:MET13 2.8 93.8 1.0 CA A:MET13 3.8 0.1 1.0 O A:MET13 4.2 0.5 1.0 C A:MET13 4.2 0.3 1.0 N A:MET13 4.6 1.0 1.0

Platinum binding site 3 out of 3 in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt303 b:0.3 occ:0.66 CG A:MET118 2.2 0.5 1.0 CE A:MET118 2.3 0.3 1.0 CB A:MET118 2.6 0.9 1.0 SD A:MET118 2.7 0.7 1.0 CA A:MET118 3.1 0.0 1.0 C A:MET118 3.8 0.6 1.0 N A:LYS119 3.8 0.6 1.0 N A:MET118 4.3 0.5 1.0 O A:MET118 4.7 0.1 1.0 N A:LYS120 4.8 0.3 1.0

Y.Chang, R.Bruni, B.Kloss, Z.Assur, E.Kloppmann, B.Rost, W.A.Hendrickson, Q.Liu. Structural Basis For A pH-Sensitive Calcium Leak Across Membranes. Science V. 344 1131 2014.
ISSN: ESSN 1095-9203
PubMed: 24904158
DOI: 10.1126/SCIENCE.1252043