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Platinum in PDB 4pgw: Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad

Protein crystallography data

The structure of Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad, PDB code: 4pgw was solved by Q.Liu, Y.Chang, W.A.Hendrickson, New York Consortium On Membrane Proteinstructure (Nycomps), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.77 / 3.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 47.640, 161.750, 123.830, 90.00, 90.00, 90.00
R / Rfree (%) 28.4 / 33

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad (pdb code 4pgw). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad, PDB code: 4pgw:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 4pgw

Go back to Platinum Binding Sites List in 4pgw
Platinum binding site 1 out of 3 in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt301

b:0.0
occ:1.00
SD A:MET188 2.1 0.2 1.0
CE A:MET188 2.4 0.1 1.0
CG A:MET188 3.9 0.5 1.0
CB A:MET188 4.7 0.0 1.0
CA A:MET188 4.9 0.6 1.0
OG A:SER191 5.0 0.8 1.0

Platinum binding site 2 out of 3 in 4pgw

Go back to Platinum Binding Sites List in 4pgw
Platinum binding site 2 out of 3 in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt302

b:0.1
occ:0.66
CE A:MET13 2.3 91.6 1.0
SD A:MET13 2.3 92.1 0.7
CB A:MET13 2.3 97.0 1.0
CG A:MET13 2.8 93.8 1.0
CA A:MET13 3.8 0.1 1.0
O A:MET13 4.2 0.5 1.0
C A:MET13 4.2 0.3 1.0
N A:MET13 4.6 1.0 1.0

Platinum binding site 3 out of 3 in 4pgw

Go back to Platinum Binding Sites List in 4pgw
Platinum binding site 3 out of 3 in the Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Yetj From Bacillus Subtilis at pH 6 By Pt-Sad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt303

b:0.3
occ:0.66
CG A:MET118 2.2 0.5 1.0
CE A:MET118 2.3 0.3 1.0
CB A:MET118 2.6 0.9 1.0
SD A:MET118 2.7 0.7 1.0
CA A:MET118 3.1 0.0 1.0
C A:MET118 3.8 0.6 1.0
N A:LYS119 3.8 0.6 1.0
N A:MET118 4.3 0.5 1.0
O A:MET118 4.7 0.1 1.0
N A:LYS120 4.8 0.3 1.0

Reference:

Y.Chang, R.Bruni, B.Kloss, Z.Assur, E.Kloppmann, B.Rost, W.A.Hendrickson, Q.Liu. Structural Basis For A pH-Sensitive Calcium Leak Across Membranes. Science V. 344 1131 2014.
ISSN: ESSN 1095-9203
PubMed: 24904158
DOI: 10.1126/SCIENCE.1252043
Page generated: Wed Dec 16 02:04:56 2020

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