Atomistry » Platinum » PDB 4nsj-5bna » 4pke
Atomistry »
  Platinum »
    PDB 4nsj-5bna »
      4pke »

Platinum in PDB 4pke: The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold

Protein crystallography data

The structure of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold, PDB code: 4pke was solved by A.Kamajaya, J.Kaiser, J.Lee, M.Reid, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.09 / 2.50
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 72.588, 72.588, 241.551, 90.00, 90.00, 120.00
R / Rfree (%) 22.8 / 23.8

Platinum Binding Sites:

The binding sites of Platinum atom in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold (pdb code 4pke). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 5 binding sites of Platinum where determined in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold, PDB code: 4pke:
Jump to Platinum binding site number: 1; 2; 3; 4; 5;

Platinum binding site 1 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 1 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt301

b:42.0
occ:0.43
OE1 A:GLU232 2.0 62.6 1.0
O A:HOH401 2.0 60.4 1.0
SD A:MET241 2.0 78.0 1.0
OE2 A:GLU232 2.1 62.9 1.0
CD A:GLU232 2.2 65.2 1.0
CG A:MET241 3.1 55.3 1.0
CE A:MET241 3.5 95.9 1.0
CB A:MET241 3.6 73.3 1.0
CG A:GLU232 3.7 63.1 1.0
CB A:GLU232 4.2 68.1 1.0
CE1 A:TYR100 4.5 66.6 1.0
CA A:MET241 4.9 62.2 1.0
OH A:TYR100 5.0 63.8 1.0

Platinum binding site 2 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 2 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt302

b:88.2
occ:0.50
NZ A:LYS160 2.1 99.2 1.0
NE2 A:HIS171 2.2 100.0 1.0
CE A:LYS160 3.0 0.1 1.0
CD2 A:HIS171 3.0 66.5 1.0
CD A:LYS160 3.2 92.7 1.0
CE1 A:HIS171 3.3 86.5 1.0
CG A:HIS171 4.2 78.4 1.0
ND1 A:HIS171 4.3 80.0 1.0
OG A:SER163 4.7 84.6 1.0
CG A:LYS160 4.7 65.3 1.0
CB A:SER163 4.9 73.7 1.0

Platinum binding site 3 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 3 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt303

b:0.2
occ:0.29
CA A:GLY44 2.7 0.1 1.0
CE A:MET45 2.7 0.9 1.0
O A:LEU43 3.2 0.7 1.0
N A:MET45 3.3 0.8 1.0
N A:GLY44 3.4 0.9 1.0
C A:GLY44 3.5 0.9 1.0
C A:LEU43 3.6 0.6 1.0
PT A:PT304 3.6 0.7 0.3
SD A:MET45 4.0 0.7 1.0
CG A:MET45 4.1 0.2 1.0
CA A:MET45 4.6 0.4 1.0
O A:GLY44 4.7 0.2 1.0
CD1 A:LEU43 4.7 0.0 1.0
CB A:MET45 4.9 0.1 1.0

Platinum binding site 4 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 4 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt304

b:0.7
occ:0.27
CE A:MET45 2.5 0.9 1.0
O A:LEU43 2.8 0.7 1.0
PT A:PT303 3.6 0.2 0.3
C A:LEU43 3.9 0.6 1.0
SD A:MET45 3.9 0.7 1.0
CA A:LEU43 4.6 1.0 1.0
N A:GLY44 4.8 0.9 1.0
CB A:LEU43 4.9 0.7 1.0

Platinum binding site 5 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 5 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt305

b:0.8
occ:0.17
NE A:ARG268 4.0 55.7 1.0
NH2 A:ARG268 4.2 47.4 1.0
CZ A:ARG268 4.6 55.2 1.0

Reference:

A.Kamajaya, J.T.Kaiser, J.Lee, M.Reid, D.C.Rees. The Structure of A Conserved Piezo Channel Domain Reveals A Topologically Distinct Beta Sandwich Fold. Structure V. 22 1520 2014.
ISSN: ISSN 0969-2126
PubMed: 25242456
DOI: 10.1016/J.STR.2014.08.009
Page generated: Wed Dec 16 02:04:56 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy