Platinum in PDB 4pke: The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold

The structure of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold, PDB code: 4pke was solved by A.Kamajaya, J.Kaiser, J.Lee, M.Reid, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.09 / 2.50
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	72.588, 72.588, 241.551, 90.00, 90.00, 120.00
R / Rfree (%)	22.8 / 23.8

The binding sites of Platinum atom in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold (pdb code 4pke). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 5 binding sites of Platinum where determined in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold, PDB code: 4pke:
Jump to Platinum binding site number: 1; 2; 3; 4; 5;

Platinum binding site 1 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt301 b:42.0 occ:0.43 OE1 A:GLU232 2.0 62.6 1.0 O A:HOH401 2.0 60.4 1.0 SD A:MET241 2.0 78.0 1.0 OE2 A:GLU232 2.1 62.9 1.0 CD A:GLU232 2.2 65.2 1.0 CG A:MET241 3.1 55.3 1.0 CE A:MET241 3.5 95.9 1.0 CB A:MET241 3.6 73.3 1.0 CG A:GLU232 3.7 63.1 1.0 CB A:GLU232 4.2 68.1 1.0 CE1 A:TYR100 4.5 66.6 1.0 CA A:MET241 4.9 62.2 1.0 OH A:TYR100 5.0 63.8 1.0

Platinum binding site 2 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt302 b:88.2 occ:0.50 NZ A:LYS160 2.1 99.2 1.0 NE2 A:HIS171 2.2 100.0 1.0 CE A:LYS160 3.0 0.1 1.0 CD2 A:HIS171 3.0 66.5 1.0 CD A:LYS160 3.2 92.7 1.0 CE1 A:HIS171 3.3 86.5 1.0 CG A:HIS171 4.2 78.4 1.0 ND1 A:HIS171 4.3 80.0 1.0 OG A:SER163 4.7 84.6 1.0 CG A:LYS160 4.7 65.3 1.0 CB A:SER163 4.9 73.7 1.0

Platinum binding site 3 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt303 b:0.2 occ:0.29 CA A:GLY44 2.7 0.1 1.0 CE A:MET45 2.7 0.9 1.0 O A:LEU43 3.2 0.7 1.0 N A:MET45 3.3 0.8 1.0 N A:GLY44 3.4 0.9 1.0 C A:GLY44 3.5 0.9 1.0 C A:LEU43 3.6 0.6 1.0 PT A:PT304 3.6 0.7 0.3 SD A:MET45 4.0 0.7 1.0 CG A:MET45 4.1 0.2 1.0 CA A:MET45 4.6 0.4 1.0 O A:GLY44 4.7 0.2 1.0 CD1 A:LEU43 4.7 0.0 1.0 CB A:MET45 4.9 0.1 1.0

Platinum binding site 4 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt304 b:0.7 occ:0.27 CE A:MET45 2.5 0.9 1.0 O A:LEU43 2.8 0.7 1.0 PT A:PT303 3.6 0.2 0.3 C A:LEU43 3.9 0.6 1.0 SD A:MET45 3.9 0.7 1.0 CA A:LEU43 4.6 1.0 1.0 N A:GLY44 4.8 0.9 1.0 CB A:LEU43 4.9 0.7 1.0

Platinum binding site 5 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt305 b:0.8 occ:0.17 NE A:ARG268 4.0 55.7 1.0 NH2 A:ARG268 4.2 47.4 1.0 CZ A:ARG268 4.6 55.2 1.0

A.Kamajaya, J.T.Kaiser, J.Lee, M.Reid, D.C.Rees. The Structure of A Conserved Piezo Channel Domain Reveals A Topologically Distinct Beta Sandwich Fold. Structure V. 22 1520 2014.
ISSN: ISSN 0969-2126
PubMed: 25242456
DOI: 10.1016/J.STR.2014.08.009