Atomistry » Platinum » PDB 4nsj-5bna » 4pke
Atomistry »
  Platinum »
    PDB 4nsj-5bna »
      4pke »

Platinum in PDB 4pke: The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold

Protein crystallography data

The structure of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold, PDB code: 4pke was solved by A.Kamajaya, J.Kaiser, J.Lee, M.Reid, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.09 / 2.50
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 72.588, 72.588, 241.551, 90.00, 90.00, 120.00
R / Rfree (%) 22.8 / 23.8

Platinum Binding Sites:

The binding sites of Platinum atom in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold (pdb code 4pke). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 5 binding sites of Platinum where determined in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold, PDB code: 4pke:
Jump to Platinum binding site number: 1; 2; 3; 4; 5;

Platinum binding site 1 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 1 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt301

b:42.0
occ:0.43
OE1 A:GLU232 2.0 62.6 1.0
O A:HOH401 2.0 60.4 1.0
SD A:MET241 2.0 78.0 1.0
OE2 A:GLU232 2.1 62.9 1.0
CD A:GLU232 2.2 65.2 1.0
CG A:MET241 3.1 55.3 1.0
CE A:MET241 3.5 95.9 1.0
CB A:MET241 3.6 73.3 1.0
CG A:GLU232 3.7 63.1 1.0
CB A:GLU232 4.2 68.1 1.0
CE1 A:TYR100 4.5 66.6 1.0
CA A:MET241 4.9 62.2 1.0
OH A:TYR100 5.0 63.8 1.0

Platinum binding site 2 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 2 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt302

b:88.2
occ:0.50
NZ A:LYS160 2.1 99.2 1.0
NE2 A:HIS171 2.2 100.0 1.0
CE A:LYS160 3.0 0.1 1.0
CD2 A:HIS171 3.0 66.5 1.0
CD A:LYS160 3.2 92.7 1.0
CE1 A:HIS171 3.3 86.5 1.0
CG A:HIS171 4.2 78.4 1.0
ND1 A:HIS171 4.3 80.0 1.0
OG A:SER163 4.7 84.6 1.0
CG A:LYS160 4.7 65.3 1.0
CB A:SER163 4.9 73.7 1.0

Platinum binding site 3 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 3 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt303

b:0.2
occ:0.29
CA A:GLY44 2.7 0.1 1.0
CE A:MET45 2.7 0.9 1.0
O A:LEU43 3.2 0.7 1.0
N A:MET45 3.3 0.8 1.0
N A:GLY44 3.4 0.9 1.0
C A:GLY44 3.5 0.9 1.0
C A:LEU43 3.6 0.6 1.0
PT A:PT304 3.6 0.7 0.3
SD A:MET45 4.0 0.7 1.0
CG A:MET45 4.1 0.2 1.0
CA A:MET45 4.6 0.4 1.0
O A:GLY44 4.7 0.2 1.0
CD1 A:LEU43 4.7 0.0 1.0
CB A:MET45 4.9 0.1 1.0

Platinum binding site 4 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 4 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt304

b:0.7
occ:0.27
CE A:MET45 2.5 0.9 1.0
O A:LEU43 2.8 0.7 1.0
PT A:PT303 3.6 0.2 0.3
C A:LEU43 3.9 0.6 1.0
SD A:MET45 3.9 0.7 1.0
CA A:LEU43 4.6 1.0 1.0
N A:GLY44 4.8 0.9 1.0
CB A:LEU43 4.9 0.7 1.0

Platinum binding site 5 out of 5 in 4pke

Go back to Platinum Binding Sites List in 4pke
Platinum binding site 5 out of 5 in the The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of The Structure of A Conserved Piezo Channel Domain Reveals A Novel Beta Sandwich Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt305

b:0.8
occ:0.17
NE A:ARG268 4.0 55.7 1.0
NH2 A:ARG268 4.2 47.4 1.0
CZ A:ARG268 4.6 55.2 1.0

Reference:

A.Kamajaya, J.T.Kaiser, J.Lee, M.Reid, D.C.Rees. The Structure of A Conserved Piezo Channel Domain Reveals A Topologically Distinct Beta Sandwich Fold. Structure V. 22 1520 2014.
ISSN: ISSN 0969-2126
PubMed: 25242456
DOI: 10.1016/J.STR.2014.08.009
Page generated: Wed Dec 16 02:04:56 2020

Last articles

Zn in 7NN0
Zn in 7NIO
Zn in 7LUP
Zn in 7M1Y
Zn in 7LO4
Zn in 7KWO
Zn in 7KJY
Zn in 7KCQ
Zn in 7KC2
Zn in 7KCB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy