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Platinum in PDB 4q37: Crystal Structure of the Hypothetical Protein TM0182 Thermotoga Maritima, N-Terminal Domain.

Protein crystallography data

The structure of Crystal Structure of the Hypothetical Protein TM0182 Thermotoga Maritima, N-Terminal Domain., PDB code: 4q37 was solved by B.Hocker, J.A.Farias-Rico, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.60 / 3.19
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 102.050, 145.300, 141.710, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 28

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of the Hypothetical Protein TM0182 Thermotoga Maritima, N-Terminal Domain. (pdb code 4q37). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Crystal Structure of the Hypothetical Protein TM0182 Thermotoga Maritima, N-Terminal Domain., PDB code: 4q37:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 4q37

Go back to Platinum Binding Sites List in 4q37
Platinum binding site 1 out of 2 in the Crystal Structure of the Hypothetical Protein TM0182 Thermotoga Maritima, N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of the Hypothetical Protein TM0182 Thermotoga Maritima, N-Terminal Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pt201

b:78.5
occ:0.58
SD E:MET54 3.2 0.4 1.0
CG E:MET54 3.4 0.9 1.0
C E:PHE53 3.7 85.5 1.0
CA E:PHE53 3.8 84.9 1.0
N E:MET54 3.9 0.3 1.0
N E:PHE53 3.9 82.2 1.0
O E:PHE53 4.1 82.9 1.0
O E:SER52 4.2 77.2 1.0
C E:SER52 4.2 75.8 1.0
O A:LYS9 4.4 66.6 1.0
CB E:MET54 4.6 0.1 1.0
CA E:MET54 4.6 0.6 1.0
CB A:MET54 4.7 73.9 1.0
CD E:PRO80 4.8 49.9 1.0
CG E:PRO80 5.0 51.3 1.0

Platinum binding site 2 out of 2 in 4q37

Go back to Platinum Binding Sites List in 4q37
Platinum binding site 2 out of 2 in the Crystal Structure of the Hypothetical Protein TM0182 Thermotoga Maritima, N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of the Hypothetical Protein TM0182 Thermotoga Maritima, N-Terminal Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Pt201

b:70.9
occ:0.71
SD F:MET54 3.1 0.8 1.0
CG F:MET54 3.5 0.9 1.0
SD D:MET54 3.6 0.3 1.0
O F:PHE53 3.7 49.6 1.0
C F:PHE53 3.9 51.2 1.0
O F:SER52 3.9 58.7 1.0
CG D:MET54 3.9 96.5 1.0
C F:SER52 4.1 57.9 1.0
CA F:PHE53 4.1 50.7 1.0
N F:PHE53 4.2 48.3 1.0
N F:MET54 4.4 0.7 1.0
CB F:SER52 4.5 56.4 1.0
CD F:PRO80 4.8 53.8 1.0
CB F:MET54 4.8 0.8 1.0
CA D:LYS9 4.8 76.7 1.0
CE F:MET54 4.8 0.1 1.0
CA F:SER52 4.9 56.7 1.0
CG F:PRO80 4.9 55.2 1.0
CA F:MET54 5.0 0.9 1.0
CB D:LYS9 5.0 78.3 1.0

Reference:

J.A.Farias-Rico, S.Schmidt, B.Hocker. Evolutionary Relationship of Two Ancient Protein Superfolds. Nat.Chem.Biol. V. 10 710 2014.
ISSN: ISSN 1552-4450
PubMed: 25038785
DOI: 10.1038/NCHEMBIO.1579
Page generated: Wed Dec 16 02:05:00 2020

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