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Platinum in PDB 4r6c: X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6

Enzymatic activity of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6

All present enzymatic activity of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6, PDB code: 4r6c was solved by J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.36 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.070, 79.070, 37.235, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 23

Other elements in 4r6c:

The structure of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 also contains other interesting chemical elements:

Bromine (Br) 31 atoms
Tantalum (Ta) 12 atoms
Chlorine (Cl) 12 atoms
Sodium (Na) 2 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 (pdb code 4r6c). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6, PDB code: 4r6c:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 4r6c

Go back to Platinum Binding Sites List in 4r6c
Platinum binding site 1 out of 2 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt203

b:26.9
occ:0.30
PT A:6BP203 0.0 26.9 0.3
BR3 A:6BP203 2.5 34.6 0.3
BR2 A:6BP203 2.5 24.4 0.3
BR6 A:6BP203 2.5 33.5 0.3
BR1 A:6BP203 2.5 34.5 0.3
BR5 A:6BP203 2.5 38.3 0.3
ND2 A:ASN65 4.5 26.4 1.0
O A:HOH355 4.7 28.7 1.0
CB A:PRO79 4.9 15.4 1.0

Platinum binding site 2 out of 2 in 4r6c

Go back to Platinum Binding Sites List in 4r6c
Platinum binding site 2 out of 2 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt204

b:22.6
occ:0.20
PT A:6BP204 0.0 22.6 0.2
BR2 A:6BP204 2.5 30.8 0.2
BR6 A:6BP204 2.6 31.3 0.2
BR3 A:6BP204 2.6 15.4 0.2
BR1 A:6BP204 2.6 43.0 0.2
O A:HOH357 4.0 35.2 1.0
CD A:ARG14 4.9 28.9 1.0

Reference:

J.R.Helliwell, A.Brink, S.Kaenket, V.L.Starkey, S.W.Tanley. X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science. Faraday Discuss 2015.
PubMed: 25605312
DOI: 10.1039/C4FD00166D
Page generated: Wed Dec 16 02:05:00 2020

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