Atomistry » Platinum » PDB 5djl-5t7l » 5k08
Atomistry »
  Platinum »
    PDB 5djl-5t7l »
      5k08 »

Platinum in PDB 5k08: Reca Mini Intein-Zeise'S Salt Complex

Protein crystallography data

The structure of Reca Mini Intein-Zeise'S Salt Complex, PDB code: 5k08 was solved by Z.Li, H.M.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.22 / 1.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.687, 63.930, 37.307, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 21

Platinum Binding Sites:

The binding sites of Platinum atom in the Reca Mini Intein-Zeise'S Salt Complex (pdb code 5k08). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Reca Mini Intein-Zeise'S Salt Complex, PDB code: 5k08:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 5k08

Go back to Platinum Binding Sites List in 5k08
Platinum binding site 1 out of 2 in the Reca Mini Intein-Zeise'S Salt Complex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Reca Mini Intein-Zeise'S Salt Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt501

b:37.3
occ:0.60
P A:TCE504 2.1 65.0 1.0
O A:HOH716 2.2 32.1 1.0
NE2 A:HIS439 2.2 35.5 1.0
SG A:CYS441 2.2 52.9 1.0
CE1 A:HIS439 3.0 42.1 1.0
C3 A:TCE504 3.0 69.4 1.0
CD2 A:HIS439 3.3 31.0 1.0
CB A:CYS441 3.3 49.7 1.0
C1 A:TCE504 3.8 68.0 1.0
ND1 A:HIS439 4.2 34.5 1.0
C6 A:TCE504 4.3 71.8 1.0
O12 A:TCE504 4.4 70.9 1.0
CG A:HIS439 4.4 34.3 1.0
CB A:HIS429 4.4 33.3 1.0
C11 A:TCE504 4.5 71.9 1.0
C4 A:TCE504 4.6 66.2 1.0
CA A:CYS441 4.6 48.5 1.0
O A:HIS429 4.9 27.4 1.0
CG A:HIS429 5.0 36.5 1.0

Platinum binding site 2 out of 2 in 5k08

Go back to Platinum Binding Sites List in 5k08
Platinum binding site 2 out of 2 in the Reca Mini Intein-Zeise'S Salt Complex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Reca Mini Intein-Zeise'S Salt Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt502

b:48.6
occ:0.61
SG A:CYS1 2.1 32.2 1.0
O A:HOH697 2.2 49.8 1.0
N A:CYS1 2.2 27.7 1.0
O A:HOH603 2.2 54.6 1.0
CB A:CYS1 3.0 41.2 1.0
CA A:CYS1 3.1 26.6 1.0
OD1 A:ASP72 3.4 51.6 1.0
OG1 A:THR70 3.8 28.1 1.0
CG A:ASP72 4.4 44.3 1.0
ND1 A:HIS73 4.5 24.2 1.0
OD2 A:ASP72 4.5 50.5 1.0
C A:CYS1 4.5 24.1 1.0
OD1 A:ASP422 4.8 51.7 1.0
CG2 A:THR70 4.8 29.1 1.0
OE1 A:GLN51 4.9 50.6 1.0
CB A:THR70 4.9 26.0 1.0
O A:CYS1 4.9 24.6 1.0

Reference:

H.Chan, S.Pearson, C.M.Green, Z.Li, J.Zhang, S.Lippard, G.Belfort, A.Shekhtman, H.M.Li, M.Belfort. Structural Insights Into Protein Splicing Inhibition By Platinum Therapeutics As Potential Anti-Microbials To Be Published.
Page generated: Wed Dec 16 02:05:20 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy