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Platinum in PDB 5l75: A Protein Structure

Protein crystallography data

The structure of A Protein Structure, PDB code: 5l75 was solved by C.Dong, H.Dong, Z.Zhang, N.Paterson, X.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.96 / 3.70
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 105.259, 210.521, 258.942, 90.00, 90.00, 90.00
R / Rfree (%) 28.4 / 32.2

Platinum Binding Sites:

The binding sites of Platinum atom in the A Protein Structure (pdb code 5l75). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the A Protein Structure, PDB code: 5l75:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 5l75

Go back to Platinum Binding Sites List in 5l75
Platinum binding site 1 out of 2 in the A Protein Structure


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of A Protein Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt301

b:0.7
occ:0.34
OE2 A:GLU30 2.5 77.5 1.0
CB A:ARG206 3.2 0.8 1.0
CD A:ARG206 3.2 0.8 1.0
CE1 A:HIS218 3.5 0.8 1.0
CG A:ARG206 3.5 0.0 1.0
CD A:GLU30 3.6 76.7 1.0
CE1 A:TYR208 3.7 0.5 1.0
CG2 A:VAL32 3.7 91.3 1.0
OH A:TYR208 3.9 0.2 1.0
O A:THR25 3.9 72.5 1.0
OE1 A:GLU30 4.0 66.6 1.0
CZ A:TYR208 4.1 0.5 1.0
ND1 A:HIS218 4.3 0.2 1.0
NE2 A:HIS218 4.4 0.1 1.0
NE A:ARG206 4.5 0.6 1.0
CB A:VAL32 4.6 86.0 1.0
CD1 A:TYR208 4.6 93.3 1.0
CA A:ARG206 4.6 85.1 1.0
CG A:GLU30 4.8 82.5 1.0
C A:ARG206 5.0 74.7 1.0

Platinum binding site 2 out of 2 in 5l75

Go back to Platinum Binding Sites List in 5l75
Platinum binding site 2 out of 2 in the A Protein Structure


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of A Protein Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Pt401

b:0.7
occ:0.59
CG G:MET305 2.2 68.3 1.0
SD G:MET305 2.3 64.9 1.0
CB G:MET305 2.8 72.5 1.0
OE1 G:GLN85 3.2 66.0 1.0
CG G:MET82 4.2 95.3 1.0
CA G:MET305 4.2 73.5 1.0
CD G:GLN85 4.3 76.7 1.0
NE2 G:GLN85 4.8 85.5 1.0
SD G:MET82 5.0 87.6 1.0
N G:MET305 5.0 75.6 1.0

Reference:

H.Dong, Z.Zhang, X.Tang, N.G.Paterson, C.Dong. Structural and Functional Insights Into the Lipopolysaccharide Abc Transporter LPTB2FG. Nat Commun V. 8 222 2017.
ISSN: ESSN 2041-1723
PubMed: 28790314
DOI: 10.1038/S41467-017-00273-5
Page generated: Wed Dec 16 02:05:21 2020

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