Platinum in PDB 5m1y: The Case of 1LKR Held at the Pdb and Its Variable Amino Acid Occupancies; Re Refinement of 4OW9 to Correct This

Enzymatic activity of The Case of 1LKR Held at the Pdb and Its Variable Amino Acid Occupancies; Re Refinement of 4OW9 to Correct This

Protein crystallography data

Other elements in 5m1y:

Platinum Binding Sites:

Platinum binding site 1 out of 3 in 5m1y

Platinum Binding Sites List in 5m1y

Platinum binding site 1 out of 3 in the The Case of 1LKR Held at the Pdb and Its Variable Amino Acid Occupancies; Re Refinement of 4OW9 to Correct This


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Case of 1LKR Held at the Pdb and Its Variable Amino Acid Occupancies; Re Refinement of 4OW9 to Correct This within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt201 b:10.1 occ:0.80 ND1 A:HIS15 2.1 12.1 1.0 CL A:CL217 2.3 17.6 1.0 I A:IOD204 2.5 10.6 0.9 I A:IOD203 2.6 14.8 0.9 HA A:HIS15 2.9 15.3 1.0 CE1 A:HIS15 3.0 13.8 1.0 CG A:HIS15 3.1 13.9 1.0 HB3 A:HIS15 3.1 14.0 1.0 HE1 A:HIS15 3.2 16.6 1.0 CB A:HIS15 3.4 11.7 1.0 CA A:HIS15 3.6 12.8 1.0 HG23 A:THR89 3.8 18.0 1.0 HZ1 A:LYS96 4.1 21.0 1.0 HZ2 A:LYS96 4.1 21.0 1.0 NE2 A:HIS15 4.2 14.8 1.0 CD2 A:HIS15 4.2 14.1 1.0 O A:HIS15 4.3 14.7 1.0 HB2 A:HIS15 4.4 14.0 1.0 C A:HIS15 4.4 12.8 1.0 NZ A:LYS96 4.6 17.5 1.0 N A:HIS15 4.7 13.1 1.0 CG2 A:THR89 4.8 15.0 1.0 HD21 A:ASN93 4.9 18.6 1.0 HG21 A:THR89 5.0 18.0 1.0 HG11 A:VAL92 5.0 14.5 1.0 OD1 A:ASN93 5.0 17.8 1.0

Platinum binding site 2 out of 3 in 5m1y

Platinum Binding Sites List in 5m1y

Platinum binding site 2 out of 3 in the The Case of 1LKR Held at the Pdb and Its Variable Amino Acid Occupancies; Re Refinement of 4OW9 to Correct This


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Case of 1LKR Held at the Pdb and Its Variable Amino Acid Occupancies; Re Refinement of 4OW9 to Correct This within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt202 b:11.7 occ:0.57 CL A:CL218 2.2 21.7 1.0 I A:IOD206 2.5 20.6 0.7 I A:IOD207 2.6 16.8 0.6 I A:IOD205 2.7 6.8 0.6 HB2 A:CYS6 3.7 16.1 1.0 HB3 A:CYS6 3.9 16.1 1.0 HE A:ARG128 4.0 23.3 1.0 HA A:GLU7 4.1 18.5 1.0 HD2 A:ARG128 4.1 22.1 1.0 CB A:CYS6 4.2 13.4 1.0 N A:GLU7 4.5 13.3 1.0 C A:CYS6 4.5 15.2 1.0 HG2 A:ARG128 4.5 21.9 1.0 NE A:ARG128 4.5 19.4 1.0 H A:GLU7 4.6 16.0 1.0 HB2 A:GLU7 4.7 18.4 1.0 O A:CYS6 4.7 13.2 1.0 CA A:GLU7 4.7 15.4 1.0 CD A:ARG128 4.7 18.4 1.0 H A:ARG128 5.0 22.8 1.0

Platinum binding site 3 out of 3 in 5m1y

Platinum Binding Sites List in 5m1y

Platinum binding site 3 out of 3 in the The Case of 1LKR Held at the Pdb and Its Variable Amino Acid Occupancies; Re Refinement of 4OW9 to Correct This


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of The Case of 1LKR Held at the Pdb and Its Variable Amino Acid Occupancies; Re Refinement of 4OW9 to Correct This within 5.0Å range: probe atom residue distance (Å) B Occ B:Pt201 b:28.2 occ:0.67 ND1 B:HIS15 2.3 18.5 1.0 CL B:CL212 2.6 21.9 1.0 I B:IOD202 2.6 34.7 0.7 I B:IOD203 2.7 24.8 0.8 HA B:HIS15 2.8 22.6 1.0 HB3 B:HIS15 3.2 22.2 1.0 CG B:HIS15 3.3 20.1 1.0 CE1 B:HIS15 3.3 18.3 1.0 CB B:HIS15 3.5 18.5 1.0 HE1 B:HIS15 3.5 22.0 1.0 CA B:HIS15 3.5 18.8 1.0 HG23 B:THR89 3.9 17.8 1.0 O B:HIS15 4.1 17.1 1.0 HZ1 B:LYS96 4.2 22.9 1.0 HZ2 B:LYS96 4.2 22.9 1.0 C B:HIS15 4.3 18.6 1.0 NE2 B:HIS15 4.4 17.9 1.0 CD2 B:HIS15 4.4 19.0 1.0 HB2 B:HIS15 4.5 22.2 1.0 NA B:NA213 4.5 16.5 1.0 O B:ARG14 4.6 20.1 1.0 NZ B:LYS96 4.7 19.1 1.0 N B:HIS15 4.7 22.4 1.0 CG2 B:THR89 4.9 14.9 1.0

Reference: