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Platinum in PDB 5z80: Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex

Platinum Binding Sites:

The binding sites of Platinum atom in the Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex (pdb code 5z80). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex, PDB code: 5z80:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 5z80

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Platinum binding site 1 out of 3 in the Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:0.3
occ:1.00
PT2 A:9F0101 0.0 0.3 1.0
N49 A:9F0101 2.0 0.4 1.0
N35 A:9F0101 2.0 0.3 1.0
N41 A:9F0101 2.0 0.4 1.0
N42 A:9F0101 2.1 0.6 1.0
H49 A:9F0101 2.5 0.4 1.0
H41 A:9F0101 2.6 0.4 1.0
H9Y A:9F0101 2.6 0.6 1.0
H9X A:9F0101 2.6 0.5 1.0
H42 A:9F0101 2.6 0.7 1.0
C51 A:9F0101 2.8 0.4 1.0
C52 A:9F0101 2.8 0.6 1.0
C50 A:9F0101 2.9 0.4 1.0
C53 A:9F0101 2.9 0.7 1.0
C36 A:9F0101 3.0 0.3 1.0
C34 A:9F0101 3.0 0.3 1.0
H51 A:9F0101 3.0 0.5 1.0
H52 A:9F0101 3.0 0.7 1.0
H36 A:9F0101 3.0 0.3 1.0
H34 A:9F0101 3.0 0.4 1.0
H9L A:9F0101 3.4 0.4 1.0
H9O A:9F0101 3.4 0.7 1.0
H53 A:9F0101 3.8 0.8 1.0
H50 A:9F0101 3.8 0.5 1.0
H9N A:9F0101 3.8 0.6 1.0
H9M A:9F0101 3.8 0.5 1.0
C37 A:9F0101 4.3 0.3 1.0
C33 A:9F0101 4.3 0.3 1.0
C21 A:9F0101 4.8 0.2 1.0

Platinum binding site 2 out of 3 in 5z80

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Platinum binding site 2 out of 3 in the Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:0.4
occ:1.00
PT1 A:9F0101 0.0 0.4 1.0
N46 A:9F0101 2.0 0.5 1.0
N30 A:9F0101 2.0 0.4 1.0
N47 A:9F0101 2.0 0.5 1.0
N48 A:9F0101 2.1 0.5 1.0
H46 A:9F0101 2.5 0.5 1.0
H47 A:9F0101 2.6 0.6 1.0
H91 A:9F0101 2.6 0.6 1.0
H92 A:9F0101 2.6 0.5 1.0
H48 A:9F0101 2.6 0.5 1.0
C61 A:9F0101 2.8 0.6 1.0
C59 A:9F0101 2.8 0.5 1.0
C60 A:9F0101 2.9 0.6 1.0
C58 A:9F0101 2.9 0.6 1.0
C29 A:9F0101 3.0 0.4 1.0
C31 A:9F0101 3.0 0.3 1.0
H29 A:9F0101 3.0 0.5 1.0
H61 A:9F0101 3.0 0.6 1.0
H59 A:9F0101 3.0 0.6 1.0
H31 A:9F0101 3.1 0.4 1.0
H9V A:9F0101 3.4 0.6 1.0
H9T A:9F0101 3.4 0.6 1.0
H58 A:9F0101 3.8 0.6 1.0
H60 A:9F0101 3.8 0.7 1.0
H9U A:9F0101 3.8 0.6 1.0
H9W A:9F0101 3.8 0.6 1.0
O2 A:DT19 4.2 0.6 1.0
C28 A:9F0101 4.3 0.4 1.0
C32 A:9F0101 4.3 0.3 1.0
H3 A:DT19 4.4 0.7 1.0
C22 A:9F0101 4.8 0.3 1.0

Platinum binding site 3 out of 3 in 5z80

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Platinum binding site 3 out of 3 in the Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Solution Structure For the 1:1 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:0.4
occ:1.00
PT3 A:9F0101 0.0 0.4 1.0
N45 A:9F0101 2.0 0.4 1.0
N44 A:9F0101 2.0 0.5 1.0
N43 A:9F0101 2.1 0.5 1.0
N25 A:9F0101 2.1 0.3 1.0
H45 A:9F0101 2.5 0.5 1.0
H90 A:9F0101 2.6 0.5 1.0
H44 A:9F0101 2.6 0.5 1.0
H43 A:9F0101 2.6 0.5 1.0
H9Z A:9F0101 2.6 0.5 1.0
C56 A:9F0101 2.8 0.5 1.0
C55 A:9F0101 2.8 0.5 1.0
C54 A:9F0101 2.8 0.5 1.0
C57 A:9F0101 2.9 0.6 1.0
C24 A:9F0101 3.0 0.3 1.0
C26 A:9F0101 3.0 0.3 1.0
H55 A:9F0101 3.0 0.5 1.0
H56 A:9F0101 3.0 0.5 1.0
H24 A:9F0101 3.0 0.4 1.0
H26 A:9F0101 3.0 0.4 1.0
H9P A:9F0101 3.2 0.6 1.0
H9S A:9F0101 3.4 0.6 1.0
H57 A:9F0101 3.8 0.7 1.0
H9R A:9F0101 3.8 0.5 1.0
H54 A:9F0101 3.8 0.6 1.0
H9Q A:9F0101 3.8 0.5 1.0
C23 A:9F0101 4.3 0.3 1.0
C27 A:9F0101 4.3 0.3 1.0
C20 A:9F0101 4.8 0.3 1.0
O4 A:DT8 4.9 0.8 1.0

Reference:

W.Liu, Y.F.Zhong, L.Y.Liu, C.T.Shen, W.Zeng, F.Wang, D.Yang, Z.W.Mao. Solution Structures of Multiple G-Quadruplex Complexes Induced By A Platinum(II)-Based Tripod Reveal Dynamic Binding Nat Commun V. 9 3496 2018.
ISSN: ESSN 2041-1723
PubMed: 30158518
DOI: 10.1038/S41467-018-05810-4
Page generated: Wed Dec 16 02:05:32 2020

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