Platinum in PDB 5z8f: Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Platinum Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Platinum atom in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
(pdb code 5z8f). This binding sites where shown within
5.0 Angstroms radius around Platinum atom.
In total 12 binding sites of Platinum where determined in the
Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex, PDB code: 5z8f:
Jump to Platinum binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Platinum binding site 1 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 1 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 1 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pt101
b:0.5
occ:1.00
|
PT2
|
A:9F0101
|
0.0
|
0.5
|
1.0
|
N49
|
A:9F0101
|
2.0
|
0.6
|
1.0
|
N41
|
A:9F0101
|
2.0
|
0.5
|
1.0
|
N35
|
A:9F0101
|
2.1
|
0.4
|
1.0
|
N42
|
A:9F0101
|
2.1
|
0.7
|
1.0
|
H49
|
A:9F0101
|
2.5
|
0.5
|
1.0
|
H41
|
A:9F0101
|
2.6
|
0.5
|
1.0
|
H9X
|
A:9F0101
|
2.6
|
0.6
|
1.0
|
H9Y
|
A:9F0101
|
2.6
|
0.7
|
1.0
|
H42
|
A:9F0101
|
2.6
|
0.8
|
1.0
|
C52
|
A:9F0101
|
2.8
|
0.7
|
1.0
|
C51
|
A:9F0101
|
2.8
|
0.6
|
1.0
|
C50
|
A:9F0101
|
2.9
|
0.5
|
1.0
|
C53
|
A:9F0101
|
2.9
|
0.8
|
1.0
|
C34
|
A:9F0101
|
3.0
|
0.4
|
1.0
|
C36
|
A:9F0101
|
3.0
|
0.4
|
1.0
|
H51
|
A:9F0101
|
3.0
|
0.7
|
1.0
|
H34
|
A:9F0101
|
3.0
|
0.5
|
1.0
|
H52
|
A:9F0101
|
3.0
|
0.8
|
1.0
|
H36
|
A:9F0101
|
3.0
|
0.5
|
1.0
|
H9L
|
A:9F0101
|
3.4
|
0.5
|
1.0
|
H9O
|
A:9F0101
|
3.4
|
0.8
|
1.0
|
H53
|
A:9F0101
|
3.8
|
0.9
|
1.0
|
H50
|
A:9F0101
|
3.8
|
0.6
|
1.0
|
H9N
|
A:9F0101
|
3.8
|
0.8
|
1.0
|
H9M
|
A:9F0101
|
3.8
|
0.6
|
1.0
|
C33
|
A:9F0101
|
4.3
|
0.4
|
1.0
|
C37
|
A:9F0101
|
4.3
|
0.4
|
1.0
|
C21
|
A:9F0101
|
4.8
|
0.3
|
1.0
|
|
Platinum binding site 2 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 2 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 2 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pt101
b:0.6
occ:1.00
|
PT1
|
A:9F0101
|
0.0
|
0.6
|
1.0
|
N46
|
A:9F0101
|
2.0
|
0.7
|
1.0
|
N30
|
A:9F0101
|
2.0
|
0.5
|
1.0
|
N47
|
A:9F0101
|
2.0
|
0.6
|
1.0
|
N48
|
A:9F0101
|
2.1
|
0.8
|
1.0
|
H46
|
A:9F0101
|
2.5
|
0.8
|
1.0
|
H47
|
A:9F0101
|
2.6
|
0.5
|
1.0
|
H91
|
A:9F0101
|
2.6
|
0.6
|
1.0
|
H92
|
A:9F0101
|
2.6
|
0.8
|
1.0
|
H48
|
A:9F0101
|
2.6
|
0.8
|
1.0
|
C59
|
A:9F0101
|
2.8
|
0.8
|
1.0
|
C61
|
A:9F0101
|
2.8
|
0.7
|
1.0
|
C60
|
A:9F0101
|
2.9
|
0.6
|
1.0
|
C58
|
A:9F0101
|
2.9
|
0.9
|
1.0
|
C29
|
A:9F0101
|
3.0
|
0.5
|
1.0
|
C31
|
A:9F0101
|
3.0
|
0.5
|
1.0
|
H59
|
A:9F0101
|
3.0
|
0.8
|
1.0
|
H61
|
A:9F0101
|
3.0
|
0.7
|
1.0
|
H29
|
A:9F0101
|
3.0
|
0.6
|
1.0
|
H31
|
A:9F0101
|
3.0
|
0.5
|
1.0
|
H9V
|
A:9F0101
|
3.4
|
0.7
|
1.0
|
H9T
|
A:9F0101
|
3.4
|
1.0
|
1.0
|
H58
|
A:9F0101
|
3.8
|
1.0
|
1.0
|
H60
|
A:9F0101
|
3.8
|
0.7
|
1.0
|
H9U
|
A:9F0101
|
3.8
|
0.9
|
1.0
|
H9W
|
A:9F0101
|
3.8
|
0.7
|
1.0
|
O2
|
A:DT19
|
3.9
|
0.6
|
1.0
|
H3
|
A:DT19
|
4.2
|
0.7
|
1.0
|
C28
|
A:9F0101
|
4.3
|
0.4
|
1.0
|
C32
|
A:9F0101
|
4.3
|
0.4
|
1.0
|
C2
|
A:DT19
|
4.8
|
0.5
|
1.0
|
C22
|
A:9F0101
|
4.8
|
0.4
|
1.0
|
N3
|
A:DT19
|
4.9
|
0.6
|
1.0
|
|
Platinum binding site 3 out
of 12 in 5z8f
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Platinum Binding Sites List in 5z8f
Platinum binding site 3 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 3 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pt101
b:1.6
occ:1.00
|
PT3
|
A:9F0101
|
0.0
|
1.6
|
1.0
|
N45
|
A:9F0101
|
2.0
|
1.9
|
1.0
|
N44
|
A:9F0101
|
2.0
|
1.7
|
1.0
|
N43
|
A:9F0101
|
2.0
|
1.8
|
1.0
|
N25
|
A:9F0101
|
2.1
|
1.4
|
1.0
|
H45
|
A:9F0101
|
2.5
|
1.9
|
1.0
|
H90
|
A:9F0101
|
2.6
|
1.6
|
1.0
|
H44
|
A:9F0101
|
2.6
|
1.6
|
1.0
|
H43
|
A:9F0101
|
2.6
|
1.7
|
1.0
|
H9Z
|
A:9F0101
|
2.6
|
1.7
|
1.0
|
C56
|
A:9F0101
|
2.8
|
2.1
|
1.0
|
C55
|
A:9F0101
|
2.8
|
2.0
|
1.0
|
C54
|
A:9F0101
|
2.8
|
1.8
|
1.0
|
C57
|
A:9F0101
|
2.9
|
2.0
|
1.0
|
C24
|
A:9F0101
|
3.0
|
1.3
|
1.0
|
C26
|
A:9F0101
|
3.0
|
1.3
|
1.0
|
H55
|
A:9F0101
|
3.0
|
2.0
|
1.0
|
H56
|
A:9F0101
|
3.0
|
2.1
|
1.0
|
H24
|
A:9F0101
|
3.0
|
1.5
|
1.0
|
H26
|
A:9F0101
|
3.0
|
1.4
|
1.0
|
H9P
|
A:9F0101
|
3.3
|
1.8
|
1.0
|
H9S
|
A:9F0101
|
3.4
|
2.1
|
1.0
|
H9R
|
A:9F0101
|
3.8
|
2.2
|
1.0
|
H57
|
A:9F0101
|
3.8
|
2.1
|
1.0
|
H54
|
A:9F0101
|
3.8
|
1.9
|
1.0
|
H9Q
|
A:9F0101
|
3.8
|
2.1
|
1.0
|
C23
|
A:9F0101
|
4.3
|
1.2
|
1.0
|
C27
|
A:9F0101
|
4.3
|
1.1
|
1.0
|
H2'
|
A:DT8
|
4.8
|
1.4
|
1.0
|
C4
|
A:DT8
|
4.8
|
1.8
|
1.0
|
C20
|
A:9F0101
|
4.8
|
1.0
|
1.0
|
N3
|
A:DT8
|
4.9
|
1.8
|
1.0
|
O4
|
A:DT8
|
5.0
|
2.0
|
1.0
|
|
Platinum binding site 4 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 4 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 4 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pt102
b:0.9
occ:1.00
|
PT2
|
A:9F0102
|
0.0
|
0.9
|
1.0
|
N49
|
A:9F0102
|
2.0
|
1.1
|
1.0
|
N41
|
A:9F0102
|
2.1
|
0.7
|
1.0
|
N35
|
A:9F0102
|
2.1
|
0.8
|
1.0
|
N42
|
A:9F0102
|
2.1
|
1.3
|
1.0
|
H49
|
A:9F0102
|
2.5
|
1.2
|
1.0
|
H9X
|
A:9F0102
|
2.6
|
0.7
|
1.0
|
H41
|
A:9F0102
|
2.6
|
0.9
|
1.0
|
H42
|
A:9F0102
|
2.6
|
1.4
|
1.0
|
H9Y
|
A:9F0102
|
2.6
|
1.5
|
1.0
|
C52
|
A:9F0102
|
2.8
|
1.3
|
1.0
|
C51
|
A:9F0102
|
2.8
|
0.9
|
1.0
|
C50
|
A:9F0102
|
2.9
|
0.8
|
1.0
|
C53
|
A:9F0102
|
2.9
|
1.6
|
1.0
|
C36
|
A:9F0102
|
3.0
|
0.8
|
1.0
|
C34
|
A:9F0102
|
3.0
|
0.7
|
1.0
|
H51
|
A:9F0102
|
3.0
|
0.8
|
1.0
|
H52
|
A:9F0102
|
3.0
|
1.3
|
1.0
|
H36
|
A:9F0102
|
3.0
|
0.8
|
1.0
|
H34
|
A:9F0102
|
3.0
|
0.7
|
1.0
|
H9L
|
A:9F0102
|
3.4
|
1.0
|
1.0
|
H9O
|
A:9F0102
|
3.4
|
1.7
|
1.0
|
OP2
|
A:DT13
|
3.6
|
0.7
|
1.0
|
H53
|
A:9F0102
|
3.8
|
1.7
|
1.0
|
H50
|
A:9F0102
|
3.8
|
0.7
|
1.0
|
H9N
|
A:9F0102
|
3.8
|
1.5
|
1.0
|
H9M
|
A:9F0102
|
3.8
|
1.0
|
1.0
|
H72
|
A:DT13
|
4.1
|
0.8
|
1.0
|
C37
|
A:9F0102
|
4.3
|
0.7
|
1.0
|
C33
|
A:9F0102
|
4.3
|
0.6
|
1.0
|
H5'
|
A:DG12
|
4.7
|
0.5
|
1.0
|
H6
|
A:DT13
|
4.7
|
0.7
|
1.0
|
C21
|
A:9F0102
|
4.8
|
0.6
|
1.0
|
P
|
A:DT13
|
4.8
|
0.6
|
1.0
|
O5'
|
A:DT13
|
4.8
|
0.6
|
1.0
|
H5''
|
A:DT13
|
4.9
|
0.7
|
1.0
|
|
Platinum binding site 5 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 5 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 5 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pt102
b:0.5
occ:1.00
|
PT1
|
A:9F0102
|
0.0
|
0.5
|
1.0
|
N46
|
A:9F0102
|
2.0
|
0.7
|
1.0
|
N47
|
A:9F0102
|
2.0
|
0.6
|
1.0
|
N30
|
A:9F0102
|
2.1
|
0.4
|
1.0
|
N48
|
A:9F0102
|
2.1
|
0.6
|
1.0
|
H46
|
A:9F0102
|
2.5
|
0.7
|
1.0
|
H92
|
A:9F0102
|
2.6
|
0.7
|
1.0
|
H91
|
A:9F0102
|
2.6
|
0.6
|
1.0
|
H48
|
A:9F0102
|
2.6
|
0.7
|
1.0
|
H47
|
A:9F0102
|
2.6
|
0.6
|
1.0
|
C59
|
A:9F0102
|
2.8
|
0.7
|
1.0
|
C61
|
A:9F0102
|
2.8
|
0.7
|
1.0
|
C60
|
A:9F0102
|
2.9
|
0.7
|
1.0
|
C58
|
A:9F0102
|
2.9
|
0.7
|
1.0
|
C31
|
A:9F0102
|
3.0
|
0.3
|
1.0
|
C29
|
A:9F0102
|
3.0
|
0.4
|
1.0
|
H61
|
A:9F0102
|
3.0
|
0.7
|
1.0
|
H59
|
A:9F0102
|
3.0
|
0.8
|
1.0
|
H31
|
A:9F0102
|
3.0
|
0.4
|
1.0
|
H29
|
A:9F0102
|
3.0
|
0.4
|
1.0
|
OP2
|
A:DG16
|
3.2
|
1.0
|
1.0
|
H9V
|
A:9F0102
|
3.4
|
0.8
|
1.0
|
H9T
|
A:9F0102
|
3.4
|
0.8
|
1.0
|
H71
|
A:DT14
|
3.4
|
0.7
|
1.0
|
OP1
|
A:DG16
|
3.5
|
1.4
|
1.0
|
H58
|
A:9F0102
|
3.8
|
0.9
|
1.0
|
H9U
|
A:9F0102
|
3.8
|
0.8
|
1.0
|
H60
|
A:9F0102
|
3.8
|
0.8
|
1.0
|
H9W
|
A:9F0102
|
3.8
|
0.8
|
1.0
|
P
|
A:DG16
|
3.8
|
0.9
|
1.0
|
C32
|
A:9F0102
|
4.3
|
0.3
|
1.0
|
C28
|
A:9F0102
|
4.3
|
0.3
|
1.0
|
C7
|
A:DT14
|
4.5
|
0.5
|
1.0
|
H3'
|
A:DA15
|
4.5
|
0.8
|
1.0
|
H6
|
A:DT14
|
4.6
|
0.5
|
1.0
|
O3'
|
A:DA15
|
4.8
|
0.7
|
1.0
|
C22
|
A:9F0102
|
4.8
|
0.3
|
1.0
|
C5
|
A:DT14
|
4.8
|
0.4
|
1.0
|
C6
|
A:DT14
|
4.9
|
0.4
|
1.0
|
H73
|
A:DT14
|
4.9
|
0.6
|
1.0
|
|
Platinum binding site 6 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 6 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 6 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pt102
b:2.2
occ:1.00
|
PT3
|
A:9F0102
|
0.0
|
2.2
|
1.0
|
N45
|
A:9F0102
|
2.0
|
2.6
|
1.0
|
N44
|
A:9F0102
|
2.0
|
2.5
|
1.0
|
N43
|
A:9F0102
|
2.0
|
2.0
|
1.0
|
N25
|
A:9F0102
|
2.1
|
1.8
|
1.0
|
H45
|
A:9F0102
|
2.5
|
2.8
|
1.0
|
H90
|
A:9F0102
|
2.6
|
2.6
|
1.0
|
H44
|
A:9F0102
|
2.6
|
2.5
|
1.0
|
H9Z
|
A:9F0102
|
2.6
|
2.0
|
1.0
|
H43
|
A:9F0102
|
2.6
|
1.8
|
1.0
|
C56
|
A:9F0102
|
2.8
|
2.4
|
1.0
|
C55
|
A:9F0102
|
2.8
|
2.8
|
1.0
|
C54
|
A:9F0102
|
2.8
|
2.9
|
1.0
|
C57
|
A:9F0102
|
2.9
|
2.2
|
1.0
|
C26
|
A:9F0102
|
3.0
|
1.7
|
1.0
|
C24
|
A:9F0102
|
3.0
|
1.9
|
1.0
|
H55
|
A:9F0102
|
3.0
|
2.7
|
1.0
|
H26
|
A:9F0102
|
3.0
|
2.0
|
1.0
|
H24
|
A:9F0102
|
3.0
|
2.2
|
1.0
|
H56
|
A:9F0102
|
3.0
|
2.3
|
1.0
|
H9P
|
A:9F0102
|
3.3
|
3.0
|
1.0
|
H9S
|
A:9F0102
|
3.4
|
2.4
|
1.0
|
H9R
|
A:9F0102
|
3.8
|
2.6
|
1.0
|
H57
|
A:9F0102
|
3.8
|
2.1
|
1.0
|
H54
|
A:9F0102
|
3.8
|
3.0
|
1.0
|
H9Q
|
A:9F0102
|
3.8
|
3.0
|
1.0
|
C27
|
A:9F0102
|
4.3
|
1.5
|
1.0
|
C23
|
A:9F0102
|
4.3
|
1.6
|
1.0
|
C20
|
A:9F0102
|
4.8
|
1.3
|
1.0
|
|
Platinum binding site 7 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 7 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 7 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Pt101
b:0.5
occ:1.00
|
PT2
|
B:9F0101
|
0.0
|
0.5
|
1.0
|
N49
|
B:9F0101
|
2.0
|
0.6
|
1.0
|
N35
|
B:9F0101
|
2.0
|
0.4
|
1.0
|
N41
|
B:9F0101
|
2.1
|
0.6
|
1.0
|
N42
|
B:9F0101
|
2.1
|
0.6
|
1.0
|
H49
|
B:9F0101
|
2.5
|
0.6
|
1.0
|
H9X
|
B:9F0101
|
2.6
|
0.6
|
1.0
|
H9Y
|
B:9F0101
|
2.6
|
0.7
|
1.0
|
H42
|
B:9F0101
|
2.6
|
0.7
|
1.0
|
H41
|
B:9F0101
|
2.6
|
0.6
|
1.0
|
C52
|
B:9F0101
|
2.8
|
0.6
|
1.0
|
C51
|
B:9F0101
|
2.8
|
0.6
|
1.0
|
C50
|
B:9F0101
|
2.9
|
0.6
|
1.0
|
C53
|
B:9F0101
|
2.9
|
0.7
|
1.0
|
C36
|
B:9F0101
|
3.0
|
0.4
|
1.0
|
C34
|
B:9F0101
|
3.0
|
0.5
|
1.0
|
H51
|
B:9F0101
|
3.0
|
0.6
|
1.0
|
H52
|
B:9F0101
|
3.0
|
0.7
|
1.0
|
H36
|
B:9F0101
|
3.0
|
0.5
|
1.0
|
H34
|
B:9F0101
|
3.0
|
0.5
|
1.0
|
H9L
|
B:9F0101
|
3.4
|
0.7
|
1.0
|
H9O
|
B:9F0101
|
3.4
|
0.8
|
1.0
|
H53
|
B:9F0101
|
3.8
|
0.8
|
1.0
|
H9N
|
B:9F0101
|
3.8
|
0.7
|
1.0
|
H50
|
B:9F0101
|
3.8
|
0.7
|
1.0
|
H9M
|
B:9F0101
|
3.8
|
0.7
|
1.0
|
C37
|
B:9F0101
|
4.3
|
0.4
|
1.0
|
C33
|
B:9F0101
|
4.3
|
0.4
|
1.0
|
O4'
|
B:DG22
|
4.7
|
0.5
|
1.0
|
C21
|
B:9F0101
|
4.8
|
0.4
|
1.0
|
|
Platinum binding site 8 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 8 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 8 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Pt101
b:0.7
occ:1.00
|
PT1
|
B:9F0101
|
0.0
|
0.7
|
1.0
|
N46
|
B:9F0101
|
2.0
|
0.8
|
1.0
|
N30
|
B:9F0101
|
2.0
|
0.6
|
1.0
|
N47
|
B:9F0101
|
2.0
|
0.8
|
1.0
|
N48
|
B:9F0101
|
2.1
|
0.7
|
1.0
|
H46
|
B:9F0101
|
2.5
|
0.9
|
1.0
|
H47
|
B:9F0101
|
2.6
|
0.8
|
1.0
|
H91
|
B:9F0101
|
2.6
|
0.8
|
1.0
|
H48
|
B:9F0101
|
2.6
|
0.7
|
1.0
|
H92
|
B:9F0101
|
2.6
|
0.8
|
1.0
|
C59
|
B:9F0101
|
2.8
|
0.8
|
1.0
|
C61
|
B:9F0101
|
2.8
|
0.8
|
1.0
|
C60
|
B:9F0101
|
2.9
|
0.9
|
1.0
|
C58
|
B:9F0101
|
2.9
|
0.8
|
1.0
|
C29
|
B:9F0101
|
3.0
|
0.5
|
1.0
|
C31
|
B:9F0101
|
3.0
|
0.6
|
1.0
|
H29
|
B:9F0101
|
3.0
|
0.6
|
1.0
|
H59
|
B:9F0101
|
3.0
|
0.8
|
1.0
|
H31
|
B:9F0101
|
3.1
|
0.6
|
1.0
|
H61
|
B:9F0101
|
3.1
|
0.8
|
1.0
|
H9V
|
B:9F0101
|
3.4
|
1.0
|
1.0
|
H9T
|
B:9F0101
|
3.4
|
0.9
|
1.0
|
O2
|
B:DT19
|
3.5
|
1.3
|
1.0
|
H58
|
B:9F0101
|
3.8
|
0.8
|
1.0
|
H60
|
B:9F0101
|
3.8
|
1.0
|
1.0
|
H9U
|
B:9F0101
|
3.8
|
0.9
|
1.0
|
H9W
|
B:9F0101
|
3.8
|
0.9
|
1.0
|
H3
|
B:DT19
|
4.1
|
1.4
|
1.0
|
C28
|
B:9F0101
|
4.3
|
0.5
|
1.0
|
C32
|
B:9F0101
|
4.3
|
0.5
|
1.0
|
C2
|
B:DT19
|
4.5
|
1.1
|
1.0
|
N3
|
B:DT19
|
4.7
|
1.2
|
1.0
|
C22
|
B:9F0101
|
4.8
|
0.5
|
1.0
|
H1'
|
B:DG10
|
5.0
|
0.6
|
1.0
|
|
Platinum binding site 9 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 9 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 9 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Pt101
b:1.0
occ:1.00
|
PT3
|
B:9F0101
|
0.0
|
1.0
|
1.0
|
N45
|
B:9F0101
|
2.0
|
1.1
|
1.0
|
N44
|
B:9F0101
|
2.0
|
1.2
|
1.0
|
N43
|
B:9F0101
|
2.0
|
0.9
|
1.0
|
N25
|
B:9F0101
|
2.1
|
0.8
|
1.0
|
H45
|
B:9F0101
|
2.5
|
1.2
|
1.0
|
H44
|
B:9F0101
|
2.6
|
1.3
|
1.0
|
H90
|
B:9F0101
|
2.6
|
1.3
|
1.0
|
H43
|
B:9F0101
|
2.6
|
0.9
|
1.0
|
H9Z
|
B:9F0101
|
2.6
|
0.9
|
1.0
|
C56
|
B:9F0101
|
2.8
|
1.1
|
1.0
|
C55
|
B:9F0101
|
2.8
|
1.3
|
1.0
|
C54
|
B:9F0101
|
2.8
|
1.4
|
1.0
|
C57
|
B:9F0101
|
2.9
|
1.0
|
1.0
|
C24
|
B:9F0101
|
3.0
|
0.8
|
1.0
|
C26
|
B:9F0101
|
3.0
|
0.7
|
1.0
|
H55
|
B:9F0101
|
3.0
|
1.3
|
1.0
|
H56
|
B:9F0101
|
3.0
|
1.2
|
1.0
|
H24
|
B:9F0101
|
3.1
|
0.9
|
1.0
|
H26
|
B:9F0101
|
3.1
|
0.7
|
1.0
|
H9P
|
B:9F0101
|
3.3
|
1.5
|
1.0
|
H9S
|
B:9F0101
|
3.4
|
1.1
|
1.0
|
H57
|
B:9F0101
|
3.8
|
1.1
|
1.0
|
H9R
|
B:9F0101
|
3.8
|
1.2
|
1.0
|
H54
|
B:9F0101
|
3.8
|
1.6
|
1.0
|
H9Q
|
B:9F0101
|
3.8
|
1.4
|
1.0
|
C23
|
B:9F0101
|
4.3
|
0.7
|
1.0
|
C27
|
B:9F0101
|
4.3
|
0.6
|
1.0
|
H71
|
B:DT8
|
4.4
|
1.5
|
1.0
|
C4
|
B:DT8
|
4.8
|
1.6
|
1.0
|
C20
|
B:9F0101
|
4.8
|
0.6
|
1.0
|
C5
|
B:DT8
|
4.8
|
1.5
|
1.0
|
O4
|
B:DT8
|
4.9
|
1.6
|
1.0
|
C7
|
B:DT8
|
5.0
|
1.5
|
1.0
|
H73
|
B:DT8
|
5.0
|
1.5
|
1.0
|
|
Platinum binding site 10 out
of 12 in 5z8f
Go back to
Platinum Binding Sites List in 5z8f
Platinum binding site 10 out
of 12 in the Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex
Mono view
Stereo pair view
|
A full contact list of Platinum with other atoms in the Pt binding
site number 10 of Solution Structure For the Unique Dimeric 4:2 Complex of A Platinum(II)-Based Tripod Bound to A Hybrid-1 Human Telomeric G- Quadruplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Pt102
b:0.7
occ:1.00
|
PT2
|
B:9F0102
|
0.0
|
0.7
|
1.0
|
N49
|
B:9F0102
|
2.0
|
0.8
|
1.0
|
N41
|
B:9F0102
|
2.0
|
0.7
|
1.0
|
N42
|
B:9F0102
|
2.1
|
0.9
|
1.0
|
N35
|
B:9F0102
|
2.1
|
0.6
|
1.0
|
H49
|
B:9F0102
|
2.5
|
0.8
|
1.0
|
H9X
|
B:9F0102
|
2.6
|
0.8
|
1.0
|
H41
|
B:9F0102
|
2.6
|
0.8
|
1.0
|
H42
|
B:9F0102
|
2.6
|
0.9
|
1.0
|
H9Y
|
B:9F0102
|
2.6
|
1.0
|
1.0
|
C51
|
B:9F0102
|
2.8
|
0.8
|
1.0
|
C52
|
B:9F0102
|
2.8
|
0.9
|
1.0
|
C50
|
B:9F0102
|
2.9
|
0.8
|
1.0
|
C53
|
B:9F0102
|
2.9
|
1.0
|
1.0
|
C34
|
B:9F0102
|
3.0
|
0.7
|
1.0
|
C36
|
B:9F0102
|
3.0
|
0.6
|
1.0
|
H51
|
B:9F0102
|
3.0
|
0.8
|
1.0
|
H52
|
B:9F0102
|
3.0
|
0.9
|
1.0
|
H34
|
B:9F0102
|
3.0
|
0.7
|
1.0
|
H36
|
B:9F0102
|
3.0
|
0.6
|
1.0
|
H9L
|
B:9F0102
|
3.4
|
0.9
|
1.0
|
H9O
|
B:9F0102
|
3.4
|
1.1
|
1.0
|
H53
|
B:9F0102
|
3.8
|
1.2
|
1.0
|
H50
|
B:9F0102
|
3.8
|
0.9
|
1.0
|
H9N
|
B:9F0102
|
3.8
|
1.0
|
1.0
|
H9M
|
B:9F0102
|
3.8
|
0.8
|
1.0
|
H5''
|
B:DG12
|
3.8
|
0.8
|
1.0
|
H72
|
B:DT13
|
3.9
|
0.7
|
1.0
|
OP2
|
B:DT13
|
3.9
|
0.8
|
1.0
|
H5'
|
B:DG12
|
4.2
|
0.8
|
1.0
|
C33
|
B:9F0102
|
4.3
|
0.6
|
1.0
|
C37
|
B:9F0102
|
4.3
|
0.6
|
1.0
|
C5'
|
B:DG12
|
4.5
|
0.7
|
1.0
|
C21
|
B:9F0102
|
4.8
|
0.6
|
1.0
|
H3'
|
B:DG12
|
4.9
|
0.8
|
1.0
|
C7
|
B:DT13
|
5.0
|
0.6
|
1.0
|
|
Reference:
W.Liu,
Y.F.Zhong,
L.Y.Liu,
C.T.Shen,
W.Zeng,
F.Wang,
D.Yang,
Z.W.Mao.
Solution Structures of Multiple G-Quadruplex Complexes Induced By A Platinum(II)-Based Tripod Reveal Dynamic Binding Nat Commun V. 9 3496 2018.
ISSN: ESSN 2041-1723
PubMed: 30158518
DOI: 10.1038/S41467-018-05810-4
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