Platinum in PDB 6fhn: Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative)

The structure of Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative), PDB code: 6fhn was solved by O.V.Moroz, P.F.Jensen, S.P.Mcdonald, N.Mcgregor, E.Blagova, G.Comamala, D.R.Segura, L.Anderson, S.M.Vasu, V.P.Rao, L.Giger, R.N.Monrad, A.Svendsen, J.E.Nielsen, B.Henrissat, G.J.Davies, H.Brumer, K.Rand, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.29 / 2.00
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	103.270, 103.270, 210.350, 90.00, 90.00, 120.00
R / Rfree (%)	17.3 / 21

The structure of Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative) also contains other interesting chemical elements:

Calcium	(Ca)	5 atoms
Chlorine	(Cl)	1 atom
Sodium	(Na)	3 atoms

The binding sites of Platinum atom in the Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative) (pdb code 6fhn). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative), PDB code: 6fhn:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in the Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative) within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt3001 b:46.8 occ:1.00 ND1 A:HIS316 2.3 32.2 1.0 SD A:MET322 2.5 34.0 0.9 O A:HOH3620 2.6 48.0 1.0 S A:SCN3004 2.7 49.4 1.0 CG A:MET322 3.1 31.2 1.0 CE A:MET322 3.2 34.8 1.0 CG A:HIS316 3.2 31.2 1.0 CE1 A:HIS316 3.3 33.5 1.0 CB A:HIS316 3.4 29.2 1.0 O A:HOH3875 3.4 52.9 1.0 O A:HOH3705 3.9 33.8 1.0 C A:SCN3004 4.1 54.0 1.0 CD2 A:HIS316 4.4 31.8 1.0 NE2 A:HIS316 4.4 32.7 1.0 O A:HOH3231 4.4 40.3 1.0 CB A:MET322 4.5 30.3 1.0 CA A:MET322 4.8 29.3 1.0 CA A:HIS316 4.9 27.2 1.0

Platinum binding site 2 out of 2 in the Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structural Dynamics and Catalytic Properties of A Multi-Modular Xanthanase (Pt Derivative) within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt3002 b:64.5 occ:0.66 NE2 A:HIS479 2.3 27.0 1.0 S A:SCN3005 2.9 53.1 1.0 CE1 A:HIS479 3.2 28.6 1.0 NH2 A:ARG481 3.2 38.2 1.0 CD2 A:HIS479 3.3 27.5 1.0 NH1 A:ARG481 3.4 35.2 1.0 C A:SCN3005 3.5 50.2 1.0 CZ A:ARG481 3.7 36.5 1.0 O A:HOH3684 4.2 45.2 1.0 N A:SCN3005 4.3 47.5 1.0 ND1 A:HIS479 4.3 28.8 1.0 CZ A:PHE231 4.4 37.2 1.0 CG A:HIS479 4.4 27.8 1.0 CE1 A:PHE231 4.7 38.3 1.0 CB A:TRP532 4.8 25.9 1.0 CD1 A:TRP532 4.9 27.6 1.0 O A:HOH3501 5.0 48.2 1.0

O.V.Moroz, P.F.Jensen, S.P.Mcdonald, N.Mcgregor, E.Blagova, G.Comamala, D.R.Segura, L.Anderson, S.M.Vasu, V.P.Rao, L.Giger, R.N.Monrad, A.Svendsen, J.E.Nielsen, B.Henrissat, G.J.Davies, H.Brumer, K.Rand, K.S.Wilson. Structural Dynamics and Catalytic Properties of A Multimodular Xanthanase Acs Catalysis 2018.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.8B00666