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Platinum in PDB 6mw5: Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Platinum

Enzymatic activity of Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Platinum

All present enzymatic activity of Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Platinum:
2.4.1.87;

Protein crystallography data

The structure of Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Platinum, PDB code: 6mw5 was solved by H.W.Kim, Z.A.Wood, C.M.West, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.69 / 2.10
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 83.780, 83.780, 75.840, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 24.2

Platinum Binding Sites:

The binding sites of Platinum atom in the Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Platinum (pdb code 6mw5). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Platinum, PDB code: 6mw5:

Platinum binding site 1 out of 1 in 6mw5

Go back to Platinum Binding Sites List in 6mw5
Platinum binding site 1 out of 1 in the Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Platinum


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Platinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt301

b:44.4
occ:0.33
O3B A:UDP302 2.0 44.2 1.0
O1A A:UDP302 2.2 34.9 1.0
NE2 A:HIS231 2.2 28.7 1.0
OD1 A:ASP119 2.4 35.2 1.0
OD2 A:ASP117 2.4 26.8 1.0
OD2 A:ASP119 2.5 38.0 1.0
CG A:ASP119 2.7 36.0 1.0
CE1 A:HIS231 3.2 27.2 1.0
CD2 A:HIS231 3.2 28.0 1.0
PB A:UDP302 3.3 45.1 1.0
CG A:ASP117 3.4 32.0 1.0
PA A:UDP302 3.4 41.6 1.0
O3A A:UDP302 3.5 43.5 1.0
CB A:ASP117 3.6 25.4 1.0
O3' A:UDP302 3.9 39.1 1.0
O A:HOH425 4.0 42.1 1.0
O2B A:UDP302 4.0 47.6 1.0
CB A:ASP119 4.2 33.6 1.0
C5' A:UDP302 4.3 46.3 1.0
ND1 A:HIS231 4.3 34.4 1.0
O5' A:UDP302 4.3 48.1 1.0
CG A:HIS231 4.4 24.3 1.0
O2A A:UDP302 4.4 42.2 1.0
NZ A:LYS237 4.5 32.5 1.0
O1B A:UDP302 4.5 41.9 1.0
OD1 A:ASP117 4.5 31.2 1.0
CA A:SER233 4.6 43.0 1.0
C3' A:UDP302 4.8 39.0 1.0
CB A:SER233 4.8 37.9 1.0
C4' A:UDP302 5.0 44.8 1.0

Reference:

M.Mandalasi, H.W.Kim, K.Rahman, P.Zhao, N.Daniel, M.O.Sheikh, H.Van Der Wel, D.Thieker, T.H.Ichikawa, J.N.Glushka, L.Wells, Z.A.Wood, C.M.West. A Glycogenin Homolog Controls Toxoplasma Gondii Growth Via Glycosylation of An E3 Ubiquitin Ligase To Be Published.
Page generated: Wed Dec 16 02:05:39 2020

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