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Platinum in PDB 6p74: Old Nuclease From Thermus Scotoductus

Protein crystallography data

The structure of Old Nuclease From Thermus Scotoductus, PDB code: 6p74 was solved by J.S.Chappie, C.J.Schiltz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 101.38 / 2.20
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.362, 101.737, 202.753, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 22.9

Other elements in 6p74:

The structure of Old Nuclease From Thermus Scotoductus also contains other interesting chemical elements:

Samarium (Sm) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Old Nuclease From Thermus Scotoductus (pdb code 6p74). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Old Nuclease From Thermus Scotoductus, PDB code: 6p74:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 6p74

Go back to Platinum Binding Sites List in 6p74
Platinum binding site 1 out of 2 in the Old Nuclease From Thermus Scotoductus


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Old Nuclease From Thermus Scotoductus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt601

b:87.8
occ:0.23
O A:HOH726 2.7 84.4 1.0
O4 A:SO4603 3.9 0.3 1.0
PT A:PT602 4.0 83.0 0.2
OG1 A:THR36 4.3 88.2 1.0
CG2 A:THR35 4.6 0.5 1.0
NH1 A:ARG11 4.6 1.0 1.0
NH2 A:ARG39 4.7 0.1 1.0
NH1 A:ARG39 4.8 0.8 1.0
CB A:THR35 4.8 0.3 1.0
CZ A:ARG39 4.8 0.5 1.0

Platinum binding site 2 out of 2 in 6p74

Go back to Platinum Binding Sites List in 6p74
Platinum binding site 2 out of 2 in the Old Nuclease From Thermus Scotoductus


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Old Nuclease From Thermus Scotoductus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt602

b:83.0
occ:0.17
O4 A:SO4603 3.1 0.3 1.0
OG1 A:THR36 3.3 88.2 1.0
SG A:CYS12 3.6 0.2 1.0
O A:GLY31 3.7 0.8 1.0
PT A:PT601 4.0 87.8 0.2
CA A:GLY31 4.0 0.7 1.0
S A:SO4603 4.1 0.2 1.0
C A:GLY31 4.1 0.0 1.0
O1 A:SO4603 4.1 0.4 1.0
O3 A:SO4603 4.4 0.8 1.0
O A:HOH726 4.6 84.4 1.0
CB A:THR36 4.6 80.2 1.0
CB A:CYS12 4.7 1.0 1.0
N A:GLY33 4.8 90.1 1.0

Reference:

C.J.Schiltz, J.S.Chappie. The Full-Length Structure of Thermus Scotoductus Old Defines the Atp Hydrolysis Properties and Catalytic Mechanism of Class 1 Old Family Nucleases To Be Published.
Page generated: Wed Dec 16 02:05:39 2020

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