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Platinum in PDB 6swj: The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt)

Protein crystallography data

The structure of The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt), PDB code: 6swj was solved by S.Lansky, M.Shiradski, N.Lavid, Y.Shoham, G.Shoham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.72 / 1.76
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 48.830, 80.280, 116.360, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 23

Platinum Binding Sites:

The binding sites of Platinum atom in the The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt) (pdb code 6swj). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 4 binding sites of Platinum where determined in the The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt), PDB code: 6swj:
Jump to Platinum binding site number: 1; 2; 3; 4;

Platinum binding site 1 out of 4 in 6swj

Go back to Platinum Binding Sites List in 6swj
Platinum binding site 1 out of 4 in the The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt501

b:44.0
occ:0.31
O A:HOH716 2.2 43.0 1.0
CD2 A:HIS278 2.5 49.0 1.0
PT A:PT503 2.7 60.4 0.2
NE2 A:HIS278 3.3 53.7 1.0
CG A:HIS278 3.6 48.5 1.0
CB A:HIS278 4.2 45.2 1.0
ND2 A:ASN276 4.3 43.9 1.0
N A:PHE279 4.4 38.7 1.0
CE1 A:HIS278 4.5 53.1 1.0
ND1 A:HIS278 4.6 52.9 1.0
C A:HIS278 4.7 38.2 1.0
CA A:PHE279 4.7 34.9 1.0
OD1 A:ASN276 4.9 43.8 1.0
ND2 A:ASN282 4.9 48.2 1.0
CB A:PHE279 5.0 34.2 1.0

Platinum binding site 2 out of 4 in 6swj

Go back to Platinum Binding Sites List in 6swj
Platinum binding site 2 out of 4 in the The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt502

b:73.9
occ:0.27
O A:HOH714 2.3 52.7 1.0
ND1 A:HIS278 3.0 52.9 1.0
CB A:HIS278 3.2 45.2 1.0
CG A:HIS278 3.5 48.5 1.0
CA A:HIS278 3.6 41.8 1.0
CE1 A:HIS278 4.1 53.1 1.0
N A:HIS278 4.2 39.4 1.0
CD1 A:LEU314 4.6 40.1 1.0
O A:HOH750 4.7 54.2 1.0
CD2 A:HIS278 4.8 49.0 1.0
C A:HIS278 4.8 38.2 1.0
C A:PRO277 5.0 39.0 1.0

Platinum binding site 3 out of 4 in 6swj

Go back to Platinum Binding Sites List in 6swj
Platinum binding site 3 out of 4 in the The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt503

b:60.4
occ:0.20
PT A:PT501 2.7 44.0 0.3
ND2 A:ASN282 3.5 48.2 1.0
CD2 A:HIS278 3.5 49.0 1.0
CA A:PHE279 3.8 34.9 1.0
NE2 A:HIS278 3.9 53.7 1.0
O A:HOH716 4.0 43.0 1.0
CB A:PHE279 4.2 34.2 1.0
N A:PHE279 4.2 38.7 1.0
CD1 A:PHE279 4.3 24.2 1.0
CG A:ASN282 4.5 46.7 1.0
CB A:ASN282 4.5 32.6 1.0
O A:HIS278 4.6 36.4 1.0
C A:HIS278 4.6 38.2 1.0
CG A:HIS278 4.6 48.5 1.0
CG A:PHE279 4.8 26.5 1.0
C A:PHE279 4.9 31.7 1.0

Platinum binding site 4 out of 4 in 6swj

Go back to Platinum Binding Sites List in 6swj
Platinum binding site 4 out of 4 in the The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt504

b:0.5
occ:0.45
O A:HOH683 2.5 43.2 1.0
NE2 A:HIS375 2.5 31.6 1.0
CE1 A:HIS375 3.2 38.0 1.0
CB A:MET408 3.6 46.4 1.0
OD1 A:ASN371 3.7 40.7 1.0
CD2 A:HIS375 3.7 30.3 1.0
CE A:MET408 4.2 42.5 1.0
CA A:MET408 4.3 35.8 1.0
ND1 A:HIS375 4.4 28.2 1.0
CG A:ASN371 4.5 35.6 1.0
ND2 A:ASN371 4.5 35.3 1.0
CG A:HIS375 4.7 29.6 1.0
CG A:MET408 4.8 40.9 1.0
SD A:MET408 4.9 41.5 1.0
N A:ASP409 5.0 38.1 1.0

Reference:

S.Lansky, M.Shiradski, N.Lavid, Y.Shoham, G.Shoham. The Kinase Domain of Gans, A Histidine Kinase From Geobacillus Stearothermophilus (with Pt) To Be Published.
Page generated: Wed Dec 16 02:05:41 2020

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