Atomistry » Platinum » PDB 5yky-7bpr » 6zlx
Atomistry »
  Platinum »
    PDB 5yky-7bpr »
      6zlx »

Platinum in PDB 6zlx: The Structure of the Clpx-Associated Factor PDIP38

Protein crystallography data

The structure of The Structure of the Clpx-Associated Factor PDIP38, PDB code: 6zlx was solved by K.Zeth, D.Dougan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.31 / 3.39
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 120.095, 120.095, 48.586, 90, 90, 120
R / Rfree (%) 24.7 / 28.7

Platinum Binding Sites:

The binding sites of Platinum atom in the The Structure of the Clpx-Associated Factor PDIP38 (pdb code 6zlx). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the The Structure of the Clpx-Associated Factor PDIP38, PDB code: 6zlx:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 6zlx

Go back to Platinum Binding Sites List in 6zlx
Platinum binding site 1 out of 2 in the The Structure of the Clpx-Associated Factor PDIP38


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Structure of the Clpx-Associated Factor PDIP38 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt401

b:192.9
occ:1.00
CE A:MET249 2.8 239.3 1.0
CE1 A:HIS319 2.8 151.7 1.0
ND1 A:HIS319 2.9 139.6 1.0
CB A:MET249 3.6 204.3 1.0
CG A:MET249 3.8 227.8 1.0
CB A:ARG263 3.8 97.0 1.0
SD A:MET249 4.0 251.3 1.0
NE2 A:HIS319 4.1 148.9 1.0
CG A:HIS319 4.3 140.3 1.0
CD1 A:TRP261 4.4 165.1 1.0
O A:TRP262 4.7 132.4 1.0
NE1 A:TRP261 4.7 157.6 1.0
C A:TRP262 4.8 122.6 1.0
CA A:ARG263 4.8 110.8 1.0
N A:ARG263 4.8 117.6 1.0
CA A:MET249 4.9 184.4 1.0
CD2 A:HIS319 4.9 147.4 1.0
O A:MET249 5.0 208.2 1.0

Platinum binding site 2 out of 2 in 6zlx

Go back to Platinum Binding Sites List in 6zlx
Platinum binding site 2 out of 2 in the The Structure of the Clpx-Associated Factor PDIP38


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Structure of the Clpx-Associated Factor PDIP38 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt402

b:284.1
occ:1.00
SG A:CYS265 2.7 132.3 1.0
CB A:CYS265 2.9 99.5 1.0
OD1 A:ASP173 3.6 125.8 1.0
NE2 A:GLN315 3.9 123.5 1.0
CA A:CYS265 4.1 90.8 1.0
CG A:ASP173 4.1 128.4 1.0
OD2 A:ASP173 4.2 152.7 1.0
CD A:GLN315 4.4 114.4 1.0
O A:TYR316 4.4 104.2 1.0
CB A:SER317 4.4 115.0 1.0
CG A:GLN315 4.6 113.9 1.0
C A:CYS265 4.9 124.9 1.0
OG A:SER317 5.0 109.5 1.0

Reference:

P.Strack, E.Brodie, H.Zhan, V.Schuenemann, T.Saiyed, K.Zeth, K.Truscott, D.Dougan. PDIP38 Is A Novel Adaptor-Like Modulator of the Mitochondrial Aaa+ Protease Clpxp To Be Published.
Page generated: Sat Aug 21 17:32:15 2021

Last articles

Ca in 7EHG
Ca in 7ELV
Ca in 7EJR
Ca in 7EDD
Ca in 7EJQ
Ca in 7EHI
Ca in 7EHH
Ca in 7EDN
Ca in 7ED1
Ca in 7EBY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy