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Platinum in PDB 6zz9: Crystal Structure of Cbpb From Streptococcus Agalactiae

Protein crystallography data

The structure of Crystal Structure of Cbpb From Streptococcus Agalactiae, PDB code: 6zz9 was solved by A.E.Mechaly, G.Covaleda-Cortes, P.A.Kaminski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.62 / 2.64
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.61, 60.61, 190.47, 90, 90, 90
R / Rfree (%) 23.3 / 25.2

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Cbpb From Streptococcus Agalactiae (pdb code 6zz9). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Crystal Structure of Cbpb From Streptococcus Agalactiae, PDB code: 6zz9:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 6zz9

Go back to Platinum Binding Sites List in 6zz9
Platinum binding site 1 out of 2 in the Crystal Structure of Cbpb From Streptococcus Agalactiae


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Cbpb From Streptococcus Agalactiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt203

b:120.4
occ:1.00
SD A:MET38 2.2 101.6 1.0
SD A:MET68 2.2 101.1 1.0
CE A:MET38 2.2 94.7 1.0
CG A:MET68 3.1 98.8 1.0
CG A:MET38 3.2 92.3 1.0
CE A:MET68 3.6 101.4 1.0
CG2 A:ILE64 4.1 88.8 1.0
CB A:MET38 4.5 88.4 1.0
CB A:MET68 4.6 96.8 1.0

Platinum binding site 2 out of 2 in 6zz9

Go back to Platinum Binding Sites List in 6zz9
Platinum binding site 2 out of 2 in the Crystal Structure of Cbpb From Streptococcus Agalactiae


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Cbpb From Streptococcus Agalactiae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt202

b:146.2
occ:1.00
SD B:MET38 2.5 110.1 1.0
CE B:MET38 2.7 109.8 1.0
CG B:MET68 2.7 130.0 1.0
SD B:MET68 3.0 136.1 1.0
CE B:MET68 3.3 133.4 1.0
CG B:MET38 3.3 99.7 1.0
CG2 B:ILE64 4.1 110.2 1.0
CB B:MET68 4.1 127.2 1.0
CA B:MET68 4.6 126.2 1.0
CB B:MET38 4.6 95.7 1.0
OE1 B:GLN71 4.7 147.7 1.0
N B:MET68 4.7 124.6 1.0
O B:ILE64 4.7 110.8 1.0
CG2 B:ILE67 4.8 122.3 1.0

Reference:

A.E.Mechaly, G.Covaleda-Cortes, P.A.Kaminski. Crystal Structure of Cbpb From Streptococcus Agalactiae To Be Published.
Page generated: Sat Aug 21 17:32:15 2021

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