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Platinum in PDB 7bd7: X-Ray Structure of Arsenoplatin-1-Encapsulated Horse Spleen Ferritin

Protein crystallography data

The structure of X-Ray Structure of Arsenoplatin-1-Encapsulated Horse Spleen Ferritin, PDB code: 7bd7 was solved by G.Ferraro, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.54 / 1.50
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 180.91, 180.91, 180.91, 90, 90, 90
R / Rfree (%) 16.6 / 18.5

Other elements in 7bd7:

The structure of X-Ray Structure of Arsenoplatin-1-Encapsulated Horse Spleen Ferritin also contains other interesting chemical elements:

Arsenic (As) 1 atom
Sodium (Na) 3 atoms
Chlorine (Cl) 1 atom
Cadmium (Cd) 15 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the X-Ray Structure of Arsenoplatin-1-Encapsulated Horse Spleen Ferritin (pdb code 7bd7). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the X-Ray Structure of Arsenoplatin-1-Encapsulated Horse Spleen Ferritin, PDB code: 7bd7:

Platinum binding site 1 out of 1 in 7bd7

Go back to Platinum Binding Sites List in 7bd7
Platinum binding site 1 out of 1 in the X-Ray Structure of Arsenoplatin-1-Encapsulated Horse Spleen Ferritin


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of X-Ray Structure of Arsenoplatin-1-Encapsulated Horse Spleen Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt223

b:28.0
occ:0.40
PT1 A:A6R223 0.0 28.0 0.4
ND1 A:HIS49 2.0 27.3 1.0
N2 A:A6R223 2.0 29.8 0.4
N1 A:A6R223 2.0 25.2 0.4
AS1 A:A6R223 2.3 37.0 0.4
CE1 A:HIS49 2.8 28.9 1.0
C3 A:A6R223 2.9 31.3 0.4
C1 A:A6R223 2.9 30.0 0.4
O2 A:A6R223 3.0 33.8 0.4
CG A:HIS49 3.1 21.7 1.0
O1 A:A6R223 3.2 29.6 0.4
O4 A:A6R223 3.6 37.1 0.4
CB A:HIS49 3.6 16.7 1.0
O3 A:A6R223 3.6 34.8 0.4
CA A:HIS49 3.8 13.1 1.0
NE2 A:HIS49 4.0 27.1 1.0
CD A:CD218 4.1 33.5 0.4
CD2 A:HIS49 4.2 27.9 1.0
C4 A:A6R223 4.3 29.9 0.4
O A:HOH320 4.3 19.5 0.5
C2 A:A6R223 4.4 29.9 0.4
OE2 A:GLU53 4.5 41.0 1.0
O A:HIS49 4.6 11.7 1.0
C A:HIS49 4.7 12.5 1.0
N A:HIS49 4.8 11.6 1.0
CB A:ARG52 5.0 15.2 1.0

Reference:

G.Ferraro, A.Pratesi, D.Cirri, P.Imbimbo, D.Maria Monti, L.Messori, A.Merlino. Arsenoplatin-Ferritin Nanocage: Structure and Cytotoxicity. Int J Mol Sci V. 22 2021.
ISSN: ESSN 1422-0067
PubMed: 33668605
DOI: 10.3390/IJMS22041874
Page generated: Sat Apr 3 18:01:24 2021

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