Platinum in PDB 1qnq: The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5

All present enzymatic activity of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5:
3.2.1.78;

The structure of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5, PDB code: 1qnq was solved by E.Sabini, H.Schubert, G.Murshudov, K.S.Wilson, M.Siika-Aho, M.Penttila, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.130, 54.290, 61.050, 90.00, 110.21, 90.00
R / Rfree (%)	11.5 / 16

The binding sites of Platinum atom in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 (pdb code 1qnq). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5, PDB code: 1qnq:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt401 b:12.6 occ:1.00 PT1 A:TPT401 0.0 12.6 1.0 N2 A:TPT401 2.0 9.9 1.0 N3 A:TPT401 2.0 12.1 1.0 N1 A:TPT401 2.1 11.0 1.0 O A:HOH2619 2.4 46.5 1.0 C11 A:TPT401 2.9 13.0 1.0 C10 A:TPT401 2.9 12.9 1.0 C5 A:TPT401 2.9 11.1 1.0 C6 A:TPT401 2.9 11.7 1.0 C15 A:TPT401 3.0 12.6 1.0 C1 A:TPT401 3.0 12.3 1.0 O A:HOH2587 3.6 15.7 1.0 O1 A:SO4411 3.8 16.9 1.0 O2 A:SO4411 3.9 17.9 1.0 C10 A:TPT402 4.0 11.5 1.0 C9 A:TPT402 4.0 11.8 1.0 C11 A:TPT402 4.1 12.7 1.0 C12 A:TPT402 4.2 11.7 1.0 C12 A:TPT401 4.2 14.2 1.0 C9 A:TPT401 4.2 12.6 1.0 C7 A:TPT401 4.3 12.4 1.0 C4 A:TPT401 4.3 11.4 1.0 C2 A:TPT401 4.3 12.9 1.0 C14 A:TPT401 4.3 12.8 1.0 N2 A:TPT402 4.4 10.0 1.0 S A:SO4411 4.4 14.6 1.0 N3 A:TPT402 4.5 13.6 1.0 C8 A:TPT402 4.6 12.9 1.0 O A:HOH2625 4.7 20.8 1.0 C8 A:TPT401 4.8 12.1 1.0 C13 A:TPT401 4.8 13.6 1.0 C3 A:TPT401 4.8 13.9 1.0 O A:HOH2340 4.9 12.7 1.0 C6 A:TPT402 4.9 10.4 1.0 O4 A:SO4411 4.9 18.3 1.0

Platinum binding site 2 out of 2 in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt402 b:15.2 occ:1.00 PT1 A:TPT402 0.0 15.2 1.0 N2 A:TPT402 2.0 10.0 1.0 N1 A:TPT402 2.0 13.2 1.0 N3 A:TPT402 2.1 13.6 1.0 O A:HOH2620 2.2 12.4 1.0 O A:HOH2619 2.8 46.5 1.0 C5 A:TPT402 2.8 14.1 1.0 C10 A:TPT402 2.8 11.5 1.0 C6 A:TPT402 2.8 10.4 1.0 C11 A:TPT402 2.9 12.7 1.0 C1 A:TPT402 3.0 14.5 1.0 C15 A:TPT402 3.1 15.3 1.0 CE2 A:TRP114 3.4 9.0 1.0 CZ2 A:TRP114 3.5 10.6 1.0 C7 A:TPT401 3.6 12.4 1.0 C6 A:TPT401 3.6 11.7 1.0 NE1 A:TRP114 3.7 8.3 1.0 C5 A:TPT401 3.8 11.1 1.0 CD2 A:TRP114 3.9 8.5 1.0 CH2 A:TRP114 4.0 8.3 1.0 C4 A:TPT401 4.0 11.4 1.0 C9 A:TPT402 4.1 11.8 1.0 N2 A:TPT401 4.2 9.9 1.0 C4 A:TPT402 4.2 14.6 1.0 C8 A:TPT401 4.2 12.1 1.0 C7 A:TPT402 4.2 13.6 1.0 C12 A:TPT402 4.2 11.7 1.0 OE1 A:GLU169 4.3 8.8 1.0 CD1 A:TRP114 4.3 7.7 1.0 C2 A:TPT402 4.3 13.6 1.0 CE3 A:TRP114 4.3 6.2 1.0 C14 A:TPT402 4.4 14.0 1.0 CG A:TRP114 4.4 6.7 1.0 CZ3 A:TRP114 4.4 6.7 1.0 O A:HOH2415 4.4 4.3 1.0 N1 A:TPT401 4.5 11.0 1.0 C10 A:TPT401 4.6 12.9 1.0 C9 A:TPT401 4.6 12.6 1.0 C8 A:TPT402 4.6 12.9 1.0 C3 A:TPT402 4.8 14.6 1.0 C13 A:TPT402 4.9 12.6 1.0 C3 A:TPT401 4.9 13.9 1.0 O A:HOH2461 4.9 8.8 1.0

E.Sabini, H.Schubert, G.Murshudov, K.S.Wilson, M.Siika-Aho, M.Penttila. The Three-Dimensional Structure of A Trichoderma Reesei Beta-Mannanase From Glycoside Hydrolase Family 5. Acta Crystallogr.,Sect.D V. 56 3 2000.
ISSN: ISSN 0907-4449
PubMed: 10666621
DOI: 10.1107/S0907444999013943