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Platinum in PDB 5k08: Reca Mini Intein-Zeise'S Salt Complex

Protein crystallography data

The structure of Reca Mini Intein-Zeise'S Salt Complex, PDB code: 5k08 was solved by Z.Li, H.M.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.22 / 1.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.687, 63.930, 37.307, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 21

Platinum Binding Sites:

The binding sites of Platinum atom in the Reca Mini Intein-Zeise'S Salt Complex (pdb code 5k08). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Reca Mini Intein-Zeise'S Salt Complex, PDB code: 5k08:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 5k08

Go back to Platinum Binding Sites List in 5k08
Platinum binding site 1 out of 2 in the Reca Mini Intein-Zeise'S Salt Complex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Reca Mini Intein-Zeise'S Salt Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt501

b:37.3
occ:0.60
P A:TCE504 2.1 65.0 1.0
O A:HOH716 2.2 32.1 1.0
NE2 A:HIS439 2.2 35.5 1.0
SG A:CYS441 2.2 52.9 1.0
CE1 A:HIS439 3.0 42.1 1.0
C3 A:TCE504 3.0 69.4 1.0
CD2 A:HIS439 3.3 31.0 1.0
CB A:CYS441 3.3 49.7 1.0
C1 A:TCE504 3.8 68.0 1.0
ND1 A:HIS439 4.2 34.5 1.0
C6 A:TCE504 4.3 71.8 1.0
O12 A:TCE504 4.4 70.9 1.0
CG A:HIS439 4.4 34.3 1.0
CB A:HIS429 4.4 33.3 1.0
C11 A:TCE504 4.5 71.9 1.0
C4 A:TCE504 4.6 66.2 1.0
CA A:CYS441 4.6 48.5 1.0
O A:HIS429 4.9 27.4 1.0
CG A:HIS429 5.0 36.5 1.0

Platinum binding site 2 out of 2 in 5k08

Go back to Platinum Binding Sites List in 5k08
Platinum binding site 2 out of 2 in the Reca Mini Intein-Zeise'S Salt Complex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Reca Mini Intein-Zeise'S Salt Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt502

b:48.6
occ:0.61
SG A:CYS1 2.1 32.2 1.0
O A:HOH697 2.2 49.8 1.0
N A:CYS1 2.2 27.7 1.0
O A:HOH603 2.2 54.6 1.0
CB A:CYS1 3.0 41.2 1.0
CA A:CYS1 3.1 26.6 1.0
OD1 A:ASP72 3.4 51.6 1.0
OG1 A:THR70 3.8 28.1 1.0
CG A:ASP72 4.4 44.3 1.0
ND1 A:HIS73 4.5 24.2 1.0
OD2 A:ASP72 4.5 50.5 1.0
C A:CYS1 4.5 24.1 1.0
OD1 A:ASP422 4.8 51.7 1.0
CG2 A:THR70 4.8 29.1 1.0
OE1 A:GLN51 4.9 50.6 1.0
CB A:THR70 4.9 26.0 1.0
O A:CYS1 4.9 24.6 1.0

Reference:

H.Chan, S.Pearson, C.M.Green, Z.Li, J.Zhang, S.Lippard, G.Belfort, A.Shekhtman, H.M.Li, M.Belfort. Structural Insights Into Protein Splicing Inhibition By Platinum Therapeutics As Potential Anti-Microbials To Be Published.
Page generated: Thu Oct 10 11:37:09 2024

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