Atomistry » Platinum » PDB 7dis-9h49 » 7jzi
Atomistry »
  Platinum »
    PDB 7dis-9h49 »
      7jzi »

Platinum in PDB 7jzi: Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain

Protein crystallography data

The structure of Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain, PDB code: 7jzi was solved by K.Xu, P.D.Kwong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.76 / 2.71
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 144.409, 72.178, 57.917, 90, 91.08, 90
R / Rfree (%) 24 / 28.1

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain (pdb code 7jzi). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain, PDB code: 7jzi:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 7jzi

Go back to Platinum Binding Sites List in 7jzi
Platinum binding site 1 out of 2 in the Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt401

b:280.5
occ:1.00
NZ B:LYS283 2.3 147.3 1.0
CE B:MET281 2.3 103.8 1.0
CE B:LYS283 2.4 131.4 1.0
SD B:MET281 2.8 130.1 1.0
CG B:MET281 3.8 114.6 1.0
CB B:MET281 3.8 109.0 1.0
CD B:LYS283 4.0 115.2 1.0
CE1 A:TYR188 4.5 98.9 1.0
CD1 A:TYR188 4.7 93.2 1.0
CG B:LYS283 4.8 116.3 1.0
OG1 A:THR141 4.9 89.8 1.0

Platinum binding site 2 out of 2 in 7jzi

Go back to Platinum Binding Sites List in 7jzi
Platinum binding site 2 out of 2 in the Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt401

b:272.9
occ:1.00
NZ D:LYS283 2.0 168.1 1.0
CE D:MET281 2.5 122.0 1.0
CE D:LYS283 3.2 155.4 1.0
SD D:MET281 3.4 138.5 1.0
CG D:MET281 3.9 103.6 1.0
CD D:LYS283 4.0 133.1 1.0
CB D:MET281 4.1 102.2 1.0
CG D:LYS283 4.1 117.8 1.0
CE2 C:TYR188 4.7 95.6 1.0
CD2 C:TYR188 4.9 91.2 1.0

Reference:

K.Xu, P.D.Kwong. Structural Basis of Polymorphic LAIR1 Targeting By Plasmodium Rifin To Be Published.
Page generated: Thu Oct 10 11:50:51 2024

Last articles

Ca in 8XRT
Ca in 8XMP
Ca in 8XRU
Ca in 8XMK
Ca in 8XPK
Ca in 8XR6
Ca in 8XMQ
Ca in 8XPH
Ca in 8XO3
Ca in 8XNJ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy