Platinum in PDB 7jzi: Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain

The structure of Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain, PDB code: 7jzi was solved by K.Xu, P.D.Kwong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.76 / 2.71
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	144.409, 72.178, 57.917, 90, 91.08, 90
R / Rfree (%)	24 / 28.1

The binding sites of Platinum atom in the Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain (pdb code 7jzi). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain, PDB code: 7jzi:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in the Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Pt401 b:280.5 occ:1.00 NZ B:LYS283 2.3 147.3 1.0 CE B:MET281 2.3 103.8 1.0 CE B:LYS283 2.4 131.4 1.0 SD B:MET281 2.8 130.1 1.0 CG B:MET281 3.8 114.6 1.0 CB B:MET281 3.8 109.0 1.0 CD B:LYS283 4.0 115.2 1.0 CE1 A:TYR188 4.5 98.9 1.0 CD1 A:TYR188 4.7 93.2 1.0 CG B:LYS283 4.8 116.3 1.0 OG1 A:THR141 4.9 89.8 1.0

Platinum binding site 2 out of 2 in the Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of LAIR1 Ectodomain (From MGD21) in Complex with Plasmodium Rifin (PF3D7_1040300) V2 Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Pt401 b:272.9 occ:1.00 NZ D:LYS283 2.0 168.1 1.0 CE D:MET281 2.5 122.0 1.0 CE D:LYS283 3.2 155.4 1.0 SD D:MET281 3.4 138.5 1.0 CG D:MET281 3.9 103.6 1.0 CD D:LYS283 4.0 133.1 1.0 CB D:MET281 4.1 102.2 1.0 CG D:LYS283 4.1 117.8 1.0 CE2 C:TYR188 4.7 95.6 1.0 CD2 C:TYR188 4.9 91.2 1.0

K.Xu, P.D.Kwong. Structural Basis of Polymorphic LAIR1 Targeting By Plasmodium Rifin To Be Published.