Platinum in PDB 7v3t: Solution Structure of Thrombin Binding Aptamer G-Quadruplex Bound A Self-Adaptive Small Molecule with Rotated Ligands

The structure of Solution Structure of Thrombin Binding Aptamer G-Quadruplex Bound A Self-Adaptive Small Molecule with Rotated Ligands also contains other interesting chemical elements:

Fluorine

(F)

20 atoms

The binding sites of Platinum atom in the Solution Structure of Thrombin Binding Aptamer G-Quadruplex Bound A Self-Adaptive Small Molecule with Rotated Ligands (pdb code 7v3t). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Solution Structure of Thrombin Binding Aptamer G-Quadruplex Bound A Self-Adaptive Small Molecule with Rotated Ligands, PDB code: 7v3t:

Platinum binding site 1 out of 1 in the Solution Structure of Thrombin Binding Aptamer G-Quadruplex Bound A Self-Adaptive Small Molecule with Rotated Ligands


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Solution Structure of Thrombin Binding Aptamer G-Quadruplex Bound A Self-Adaptive Small Molecule with Rotated Ligands within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt101 b:0.0 occ:1.00 PT1 A:5L1101 0.0 0.0 1.0 C11 A:5L1101 2.0 0.0 1.0 N1 A:5L1101 2.0 0.0 1.0 C19 A:5L1101 2.0 0.0 1.0 C28 A:5L1101 2.1 0.0 1.0 H2C A:5L1101 2.8 0.0 1.0 C6 A:5L1101 2.9 0.0 1.0 C5 A:5L1101 2.9 0.0 1.0 C1 A:5L1101 3.0 0.0 1.0 N7 A:5L1101 3.0 0.0 1.0 N4 A:5L1101 3.0 0.0 1.0 C10 A:5L1101 3.1 0.0 1.0 H1 A:5L1101 3.1 0.0 1.0 N3 A:5L1101 3.1 0.0 1.0 N6 A:5L1101 3.1 0.0 1.0 H10 A:5L1101 3.2 0.0 1.0 H3B A:5L1101 3.3 0.0 1.0 H3C A:5L1101 3.3 0.0 1.0 N2 A:5L1101 3.4 0.0 1.0 N5 A:5L1101 3.4 0.0 1.0 C29 A:5L1101 3.4 0.0 1.0 C20 A:5L1101 3.4 0.0 1.0 C25 A:5L1101 3.6 0.0 1.0 C16 A:5L1101 3.7 0.0 1.0 H22 A:DG11 3.9 0.0 1.0 H2A A:5L1101 4.0 0.0 1.0 N2 A:DG11 4.2 0.0 1.0 C7 A:5L1101 4.2 0.0 1.0 C18 A:5L1101 4.3 0.0 1.0 C4 A:5L1101 4.3 0.0 1.0 C27 A:5L1101 4.3 0.0 1.0 C17 A:5L1101 4.3 0.0 1.0 H2B A:5L1101 4.3 0.0 1.0 C9 A:5L1101 4.3 0.0 1.0 C26 A:5L1101 4.3 0.0 1.0 C2 A:5L1101 4.4 0.0 1.0 H21 A:DG11 4.4 0.0 1.0 H3A A:5L1101 4.5 0.0 1.0 C12 A:5L1101 4.5 0.0 1.0 C21 A:5L1101 4.6 0.0 1.0 N7 A:DG5 4.8 0.0 1.0 C3 A:5L1101 4.8 0.0 1.0 C2 A:DG11 4.8 0.0 1.0 H12 A:5L1101 4.8 0.0 1.0 C8 A:5L1101 4.8 0.0 1.0 C24 A:5L1101 4.8 0.0 1.0 H21 A:5L1101 4.9 0.0 1.0 C15 A:5L1101 4.9 0.0 1.0 H8 A:DG5 4.9 0.0 1.0

B.C.Zhu, J.He, X.Y.Xia, J.Jiang, W.Liu, L.Y.Liu, B.B.Liang, H.G.Yao, Z.Ke, W.Xia, Z.W.Mao. Solution Structure of A Thrombin Binding Aptamer Complex with A Non-Planar Platinum(II) Compound. Chem Sci V. 13 8371 2022.
ISSN: ISSN 2041-6520
PubMed: 35919711
DOI: 10.1039/D2SC01196D