Platinum in PDB 8abq: Snx Heterodimer (Pt)

The structure of Snx Heterodimer (Pt), PDB code: 8abq was solved by C.Lopez-Robles, S.Scaramuzza, E.N.Astorga-Simon, S.Banos-Mateos, A.Vidaurrazaga, A.L.Rojas, D.Castano, A.Hierro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.47 / 2.81
Space group	P 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	52.69, 51.47, 192.32, 90, 90, 90
R / Rfree (%)	25.2 / 30.6

The binding sites of Platinum atom in the Snx Heterodimer (Pt) (pdb code 8abq). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 8 binding sites of Platinum where determined in the Snx Heterodimer (Pt), PDB code: 8abq:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Platinum binding site 1 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Snx Heterodimer (Pt) within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt601 b:147.0 occ:1.00 NH1 A:ARG322 2.2 91.4 1.0 CB A:CYS318 2.5 94.9 1.0 SG A:CYS318 2.7 95.5 1.0 CZ A:ARG322 3.0 82.4 1.0 NH2 A:ARG322 3.0 72.5 1.0 OE1 C:GLU257 3.3 84.5 1.0 NE2 A:GLN314 3.6 93.8 1.0 CD C:GLU257 3.9 90.8 1.0 CA A:CYS318 4.0 93.8 1.0 OE2 C:GLU257 4.1 89.5 1.0 NE A:ARG322 4.2 77.3 1.0 CD A:GLN314 4.4 91.5 1.0 C A:CYS318 4.5 89.2 1.0 CA A:GLU315 4.6 66.3 1.0 OE1 A:GLN314 4.7 91.6 1.0 O A:GLN314 4.8 99.5 1.0 O A:GLU315 4.8 80.6 1.0 N A:CYS318 4.8 88.4 1.0 O A:CYS318 4.9 98.7 1.0 CG C:GLU257 4.9 94.6 1.0

Platinum binding site 2 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Snx Heterodimer (Pt) within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt602 b:203.7 occ:1.00 SD A:MET414 2.3 59.2 1.0 CE A:MET414 3.0 30.9 1.0 NH2 A:ARG413 3.5 51.2 1.0 CG A:MET414 3.9 68.5 1.0 CZ A:ARG413 4.3 57.3 1.0 CB A:MET414 4.5 57.8 1.0 NH1 A:ARG413 4.5 58.2 1.0

Platinum binding site 3 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Snx Heterodimer (Pt) within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt603 b:152.3 occ:1.00 CG A:MET353 3.0 49.3 1.0 SD A:MET353 4.1 52.0 1.0 O A:LYS349 4.1 63.9 1.0 CB A:MET353 4.2 51.1 1.0 CE A:MET353 4.8 36.3 1.0

Platinum binding site 4 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Snx Heterodimer (Pt) within 5.0Å range: probe atom residue distance (Å) B Occ B:Pt601 b:191.9 occ:1.00 SD B:MET414 2.2 70.9 1.0 CA B:MET414 2.4 76.4 1.0 CG B:MET414 2.7 69.8 1.0 CB B:MET414 2.8 75.2 1.0 N B:MET414 3.0 71.1 1.0 O B:ARG413 3.3 75.7 1.0 C B:ARG413 3.4 70.3 1.0 CD1 B:TRP417 3.4 59.6 1.0 CB B:TRP417 3.5 80.6 1.0 CG B:TRP417 3.6 69.6 1.0 C B:MET414 3.7 80.7 1.0 O B:MET414 4.0 96.5 1.0 CE B:MET414 4.0 46.7 1.0 NE1 B:TRP417 4.4 62.1 1.0 CZ B:PHE467 4.5 69.3 1.0 CA B:ARG413 4.7 67.6 1.0 O B:PHE410 4.7 76.5 1.0 CA B:TRP417 4.7 69.4 1.0 CD2 B:TRP417 4.7 68.6 1.0 N B:LYS415 4.8 80.6 1.0 CB B:ARG413 4.8 55.0 1.0 CE2 B:PHE467 4.8 67.8 1.0 N B:TRP417 4.9 69.9 1.0

Platinum binding site 5 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Snx Heterodimer (Pt) within 5.0Å range: probe atom residue distance (Å) B Occ B:Pt602 b:137.9 occ:1.00 NE2 B:GLN321 2.7 121.0 1.0 SG B:CYS318 2.7 98.3 1.0 CA B:CYS318 3.5 100.1 1.0 CB B:CYS318 3.7 109.4 1.0 CD B:GLN321 3.7 112.3 1.0 O B:GLU317 4.0 117.1 1.0 N B:CYS318 4.1 91.9 1.0 NH2 B:ARG322 4.2 85.6 1.0 OE1 B:GLN321 4.2 106.4 1.0 CB B:GLN321 4.3 102.4 1.0 C B:GLU317 4.4 104.9 1.0 OE1 B:GLN314 4.5 102.3 1.0 CZ B:ARG322 4.5 90.6 1.0 C B:CYS318 4.6 96.2 1.0 CG B:GLN321 4.6 91.8 1.0 O B:CYS318 4.6 109.2 1.0 NE B:ARG322 4.9 93.1 1.0 CD B:ARG322 5.0 90.8 1.0

Platinum binding site 6 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Snx Heterodimer (Pt) within 5.0Å range: probe atom residue distance (Å) B Occ D:Pt501 b:178.3 occ:1.00 NZ D:LYS238 2.1 91.1 1.0 CE D:LYS238 3.4 95.8 1.0 CA D:GLY281 4.5 91.8 1.0 CD D:LYS238 4.6 101.2 1.0 NH2 D:ARG277 4.7 100.3 1.0 O D:GLY281 5.0 71.8 1.0

Platinum binding site 7 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 7 of Snx Heterodimer (Pt) within 5.0Å range: probe atom residue distance (Å) B Occ D:Pt502 b:126.1 occ:1.00 NE2 D:HIS246 3.4 104.1 1.0 PT D:PT503 3.8 231.9 1.0 O D:ASP242 3.8 85.7 1.0 CD2 D:HIS246 3.8 98.2 1.0 CB D:ASP242 4.1 81.2 1.0 CE1 D:HIS246 4.2 106.6 1.0 CG2 D:ILE245 4.3 101.9 1.0 C D:ASP242 4.5 77.2 1.0 CA D:ASP242 4.6 76.9 1.0 CG D:ASP242 4.7 88.0 1.0 CG D:HIS246 4.7 99.0 1.0 ND1 D:HIS246 4.9 103.8 1.0

Platinum binding site 8 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 8 of Snx Heterodimer (Pt) within 5.0Å range: probe atom residue distance (Å) B Occ D:Pt503 b:231.9 occ:1.00 PT D:PT502 3.8 126.1 1.0 CG2 D:ILE245 4.0 101.9 1.0 CE1 D:HIS246 4.1 106.6 1.0 ND1 D:HIS246 4.4 103.8 1.0 NE2 D:HIS246 4.5 104.1 1.0

C.Lopez-Robles, S.Scaramuzza, E.N.Astorga-Simon, M.Ishida, C.D.Williamson, S.Banos-Mateos, D.Gil-Carton, M.Romero, A.Vidaurrazaga, J.Fernandez-Recio, A.L.Rojas, J.S.Bonifacino, D.Castano, A.Hierro. Architecture of the Escpe-1 Membrane Coat Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01014-7