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Platinum in PDB 7dis: Structure of the PFGRX1 with Platinum

Enzymatic activity of Structure of the PFGRX1 with Platinum

All present enzymatic activity of Structure of the PFGRX1 with Platinum:
1.8.4.2;

Protein crystallography data

The structure of Structure of the PFGRX1 with Platinum, PDB code: 7dis was solved by Y.Manickam, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.56 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 48.492, 48.492, 82.69, 90, 90, 120
R / Rfree (%) 15.6 / 20.5

Platinum Binding Sites:

The binding sites of Platinum atom in the Structure of the PFGRX1 with Platinum (pdb code 7dis). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Structure of the PFGRX1 with Platinum, PDB code: 7dis:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 7dis

Go back to Platinum Binding Sites List in 7dis
Platinum binding site 1 out of 3 in the Structure of the PFGRX1 with Platinum


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structure of the PFGRX1 with Platinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt203

b:38.9
occ:0.45
PT A:PT203 0.0 38.9 0.5
PT A:PT203 2.0 46.9 0.6
ND1 A:HIS49 2.1 39.6 1.0
CE1 A:HIS49 2.8 46.2 1.0
CG A:HIS49 2.8 40.6 1.0
CB A:HIS49 3.3 36.4 1.0
OD1 A:ASN19 3.7 29.8 1.0
NE2 A:HIS49 3.7 46.1 1.0
CD2 A:HIS49 3.7 42.1 1.0
CA A:HIS49 4.2 27.5 1.0
CG A:ASN19 4.4 30.7 1.0
O A:HOH328 4.5 38.1 0.7
ND2 A:ASN19 4.5 31.2 1.0
O A:MET48 4.7 30.2 1.0
O A:HOH326 4.8 45.6 1.0

Platinum binding site 2 out of 3 in 7dis

Go back to Platinum Binding Sites List in 7dis
Platinum binding site 2 out of 3 in the Structure of the PFGRX1 with Platinum


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structure of the PFGRX1 with Platinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt203

b:46.9
occ:0.55
PT A:PT203 0.0 46.9 0.6
PT A:PT203 2.0 38.9 0.5
ND1 A:HIS49 2.3 39.6 1.0
CE1 A:HIS49 3.2 46.2 1.0
CG A:HIS49 3.3 40.6 1.0
CB A:HIS49 3.5 36.4 1.0
O A:MET48 3.6 30.2 1.0
CA A:HIS49 3.7 27.5 1.0
O A:HOH319 4.0 26.9 0.5
NE2 A:HIS49 4.4 46.1 1.0
CD2 A:HIS49 4.4 42.1 1.0
O A:HOH326 4.4 45.6 1.0
C A:MET48 4.5 22.8 1.0
N A:HIS49 4.5 22.7 1.0
N A:VAL50 4.7 25.9 1.0
C A:HIS49 4.7 25.2 1.0
OD1 A:ASN19 4.8 29.8 1.0

Platinum binding site 3 out of 3 in 7dis

Go back to Platinum Binding Sites List in 7dis
Platinum binding site 3 out of 3 in the Structure of the PFGRX1 with Platinum


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Structure of the PFGRX1 with Platinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt204

b:40.1
occ:0.22
SD A:MET59 2.2 30.4 1.0
O A:HOH374 2.4 52.1 1.0
CE A:MET59 2.9 36.7 1.0
O A:HOH375 3.0 52.3 0.6
CG A:MET59 3.3 28.8 1.0
OE1 A:GLN63 3.3 30.4 1.0
CB A:MET59 4.0 20.3 1.0
O A:HOH368 4.2 47.9 1.0
CD A:GLN63 4.5 29.0 1.0
O A:HOH318 4.6 40.7 1.0

Reference:

Y.Manickam, A.Sharma. Interaction of Metals with PFGRX1 To Be Published.
Page generated: Thu Nov 25 10:35:31 2021

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