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Platinum in PDB 7vs6: Phloem Lectin (PP2) Structure -Native Form

Protein crystallography data

The structure of Phloem Lectin (PP2) Structure -Native Form, PDB code: 7vs6 was solved by N.Sivaji, K.B.Bobbili, K.Suguna, A.Surolia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.50 / 2.50
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 52.69, 52.69, 261.83, 90, 90, 120
R / Rfree (%) 19.6 / 25.6

Platinum Binding Sites:

The binding sites of Platinum atom in the Phloem Lectin (PP2) Structure -Native Form (pdb code 7vs6). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Phloem Lectin (PP2) Structure -Native Form, PDB code: 7vs6:

Platinum binding site 1 out of 1 in 7vs6

Go back to Platinum Binding Sites List in 7vs6
Platinum binding site 1 out of 1 in the Phloem Lectin (PP2) Structure -Native Form


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Phloem Lectin (PP2) Structure -Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt201

b:15.9
occ:1.00
SG A:CYS51 2.2 17.1 1.0
O A:CYS51 2.8 15.6 1.0
CZ3 A:TRP53 3.2 13.5 1.0
CB A:CYS51 3.3 15.4 1.0
C A:CYS51 3.3 15.0 1.0
CE3 A:TRP53 3.5 12.8 1.0
CZ A:PHE134 3.8 18.0 1.0
CE1 A:PHE134 3.8 18.6 1.0
CA A:CYS51 3.9 16.1 1.0
CE2 A:PHE134 3.9 18.8 1.0
CD1 A:PHE134 3.9 18.5 1.0
CD2 A:PHE134 4.0 18.6 1.0
N A:PHE134 4.0 15.0 1.0
CG A:PHE134 4.0 17.2 1.0
N A:ARG52 4.0 15.9 1.0
O A:PHE132 4.0 18.4 1.0
CA A:GLY133 4.1 15.9 1.0
CH2 A:TRP53 4.2 13.4 1.0
C A:GLY133 4.4 15.1 1.0
OG A:SER15 4.6 18.0 1.0
CD2 A:TRP53 4.6 13.2 1.0
CA A:ARG52 4.6 17.4 1.0
CB A:PHE134 4.8 16.6 1.0
C A:PHE132 4.8 17.5 1.0
CG2 A:VAL70 4.9 17.8 1.0
N A:CYS51 4.9 15.9 1.0
CA A:PHE134 4.9 15.7 1.0
N A:GLY133 5.0 16.6 1.0
N A:TRP53 5.0 14.5 1.0

Reference:

N.Sivaji, K.B.Bobbili, K.Suguna, A.Surolia. Phloem Lectin (PP2) Structure- Native Form To Be Published.
Page generated: Fri Apr 7 19:48:43 2023

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