Atomistry » Platinum » PDB 7dis-8ijc » 8abq
Atomistry »
  Platinum »
    PDB 7dis-8ijc »
      8abq »

Platinum in PDB 8abq: Snx Heterodimer (Pt)

Protein crystallography data

The structure of Snx Heterodimer (Pt), PDB code: 8abq was solved by C.Lopez-Robles, S.Scaramuzza, E.N.Astorga-Simon, S.Banos-Mateos, A.Vidaurrazaga, A.L.Rojas, D.Castano, A.Hierro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.47 / 2.81
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 52.69, 51.47, 192.32, 90, 90, 90
R / Rfree (%) 25.2 / 30.6

Platinum Binding Sites:

The binding sites of Platinum atom in the Snx Heterodimer (Pt) (pdb code 8abq). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 8 binding sites of Platinum where determined in the Snx Heterodimer (Pt), PDB code: 8abq:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Platinum binding site 1 out of 8 in 8abq

Go back to Platinum Binding Sites List in 8abq
Platinum binding site 1 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Snx Heterodimer (Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt601

b:147.0
occ:1.00
NH1 A:ARG322 2.2 91.4 1.0
CB A:CYS318 2.5 94.9 1.0
SG A:CYS318 2.7 95.5 1.0
CZ A:ARG322 3.0 82.4 1.0
NH2 A:ARG322 3.0 72.5 1.0
OE1 C:GLU257 3.3 84.5 1.0
NE2 A:GLN314 3.6 93.8 1.0
CD C:GLU257 3.9 90.8 1.0
CA A:CYS318 4.0 93.8 1.0
OE2 C:GLU257 4.1 89.5 1.0
NE A:ARG322 4.2 77.3 1.0
CD A:GLN314 4.4 91.5 1.0
C A:CYS318 4.5 89.2 1.0
CA A:GLU315 4.6 66.3 1.0
OE1 A:GLN314 4.7 91.6 1.0
O A:GLN314 4.8 99.5 1.0
O A:GLU315 4.8 80.6 1.0
N A:CYS318 4.8 88.4 1.0
O A:CYS318 4.9 98.7 1.0
CG C:GLU257 4.9 94.6 1.0

Platinum binding site 2 out of 8 in 8abq

Go back to Platinum Binding Sites List in 8abq
Platinum binding site 2 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Snx Heterodimer (Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt602

b:203.7
occ:1.00
SD A:MET414 2.3 59.2 1.0
CE A:MET414 3.0 30.9 1.0
NH2 A:ARG413 3.5 51.2 1.0
CG A:MET414 3.9 68.5 1.0
CZ A:ARG413 4.3 57.3 1.0
CB A:MET414 4.5 57.8 1.0
NH1 A:ARG413 4.5 58.2 1.0

Platinum binding site 3 out of 8 in 8abq

Go back to Platinum Binding Sites List in 8abq
Platinum binding site 3 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Snx Heterodimer (Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt603

b:152.3
occ:1.00
CG A:MET353 3.0 49.3 1.0
SD A:MET353 4.1 52.0 1.0
O A:LYS349 4.1 63.9 1.0
CB A:MET353 4.2 51.1 1.0
CE A:MET353 4.8 36.3 1.0

Platinum binding site 4 out of 8 in 8abq

Go back to Platinum Binding Sites List in 8abq
Platinum binding site 4 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Snx Heterodimer (Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt601

b:191.9
occ:1.00
SD B:MET414 2.2 70.9 1.0
CA B:MET414 2.4 76.4 1.0
CG B:MET414 2.7 69.8 1.0
CB B:MET414 2.8 75.2 1.0
N B:MET414 3.0 71.1 1.0
O B:ARG413 3.3 75.7 1.0
C B:ARG413 3.4 70.3 1.0
CD1 B:TRP417 3.4 59.6 1.0
CB B:TRP417 3.5 80.6 1.0
CG B:TRP417 3.6 69.6 1.0
C B:MET414 3.7 80.7 1.0
O B:MET414 4.0 96.5 1.0
CE B:MET414 4.0 46.7 1.0
NE1 B:TRP417 4.4 62.1 1.0
CZ B:PHE467 4.5 69.3 1.0
CA B:ARG413 4.7 67.6 1.0
O B:PHE410 4.7 76.5 1.0
CA B:TRP417 4.7 69.4 1.0
CD2 B:TRP417 4.7 68.6 1.0
N B:LYS415 4.8 80.6 1.0
CB B:ARG413 4.8 55.0 1.0
CE2 B:PHE467 4.8 67.8 1.0
N B:TRP417 4.9 69.9 1.0

Platinum binding site 5 out of 8 in 8abq

Go back to Platinum Binding Sites List in 8abq
Platinum binding site 5 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Snx Heterodimer (Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt602

b:137.9
occ:1.00
NE2 B:GLN321 2.7 121.0 1.0
SG B:CYS318 2.7 98.3 1.0
CA B:CYS318 3.5 100.1 1.0
CB B:CYS318 3.7 109.4 1.0
CD B:GLN321 3.7 112.3 1.0
O B:GLU317 4.0 117.1 1.0
N B:CYS318 4.1 91.9 1.0
NH2 B:ARG322 4.2 85.6 1.0
OE1 B:GLN321 4.2 106.4 1.0
CB B:GLN321 4.3 102.4 1.0
C B:GLU317 4.4 104.9 1.0
OE1 B:GLN314 4.5 102.3 1.0
CZ B:ARG322 4.5 90.6 1.0
C B:CYS318 4.6 96.2 1.0
CG B:GLN321 4.6 91.8 1.0
O B:CYS318 4.6 109.2 1.0
NE B:ARG322 4.9 93.1 1.0
CD B:ARG322 5.0 90.8 1.0

Platinum binding site 6 out of 8 in 8abq

Go back to Platinum Binding Sites List in 8abq
Platinum binding site 6 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Snx Heterodimer (Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt501

b:178.3
occ:1.00
NZ D:LYS238 2.1 91.1 1.0
CE D:LYS238 3.4 95.8 1.0
CA D:GLY281 4.5 91.8 1.0
CD D:LYS238 4.6 101.2 1.0
NH2 D:ARG277 4.7 100.3 1.0
O D:GLY281 5.0 71.8 1.0

Platinum binding site 7 out of 8 in 8abq

Go back to Platinum Binding Sites List in 8abq
Platinum binding site 7 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 7 of Snx Heterodimer (Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt502

b:126.1
occ:1.00
NE2 D:HIS246 3.4 104.1 1.0
PT D:PT503 3.8 231.9 1.0
O D:ASP242 3.8 85.7 1.0
CD2 D:HIS246 3.8 98.2 1.0
CB D:ASP242 4.1 81.2 1.0
CE1 D:HIS246 4.2 106.6 1.0
CG2 D:ILE245 4.3 101.9 1.0
C D:ASP242 4.5 77.2 1.0
CA D:ASP242 4.6 76.9 1.0
CG D:ASP242 4.7 88.0 1.0
CG D:HIS246 4.7 99.0 1.0
ND1 D:HIS246 4.9 103.8 1.0

Platinum binding site 8 out of 8 in 8abq

Go back to Platinum Binding Sites List in 8abq
Platinum binding site 8 out of 8 in the Snx Heterodimer (Pt)


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 8 of Snx Heterodimer (Pt) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt503

b:231.9
occ:1.00
PT D:PT502 3.8 126.1 1.0
CG2 D:ILE245 4.0 101.9 1.0
CE1 D:HIS246 4.1 106.6 1.0
ND1 D:HIS246 4.4 103.8 1.0
NE2 D:HIS246 4.5 104.1 1.0

Reference:

C.Lopez-Robles, S.Scaramuzza, E.N.Astorga-Simon, M.Ishida, C.D.Williamson, S.Banos-Mateos, D.Gil-Carton, M.Romero, A.Vidaurrazaga, J.Fernandez-Recio, A.L.Rojas, J.S.Bonifacino, D.Castano, A.Hierro. Architecture of the Escpe-1 Membrane Coat Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01014-7
Page generated: Fri Jul 28 03:55:20 2023

Last articles

Ca in 7KIQ
Ca in 7KL5
Ca in 7KIR
Ca in 7KHV
Ca in 7KIO
Ca in 7KBU
Ca in 7KII
Ca in 7KHS
Ca in 7KGZ
Ca in 7KGQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy