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Platinum in PDB 8auc: Structure of Peptidoglycan Hydrolase CG1735 From Corynebacterium Glutamicum, Trigonal Crystal Form

Protein crystallography data

The structure of Structure of Peptidoglycan Hydrolase CG1735 From Corynebacterium Glutamicum, Trigonal Crystal Form, PDB code: 8auc was solved by Q.Gaday, A.M.Wehenkel, P.M.Alzari, P.Legrand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.57 / 3.50
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 230.58, 230.58, 416.69, 90, 90, 120
R / Rfree (%) 22.6 / 26

Platinum Binding Sites:

The binding sites of Platinum atom in the Structure of Peptidoglycan Hydrolase CG1735 From Corynebacterium Glutamicum, Trigonal Crystal Form (pdb code 8auc). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Structure of Peptidoglycan Hydrolase CG1735 From Corynebacterium Glutamicum, Trigonal Crystal Form, PDB code: 8auc:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 8auc

Go back to Platinum Binding Sites List in 8auc
Platinum binding site 1 out of 2 in the Structure of Peptidoglycan Hydrolase CG1735 From Corynebacterium Glutamicum, Trigonal Crystal Form


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structure of Peptidoglycan Hydrolase CG1735 From Corynebacterium Glutamicum, Trigonal Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt701

b:94.8
occ:1.00
NH2 A:ARG68 2.3 68.0 1.0
NH1 A:ARG68 2.5 70.8 1.0
CZ A:ARG68 2.8 74.8 1.0
CB A:MET64 3.1 85.3 1.0
CG2 A:THR213 3.7 80.9 1.0
NE A:ARG68 4.0 77.0 1.0
CA A:MET64 4.5 81.2 1.0
CB B:SER578 4.6 102.9 1.0
N B:SER578 4.7 93.1 1.0
CD2 A:LEU209 4.7 70.9 1.0
C A:MET64 5.0 80.1 1.0

Platinum binding site 2 out of 2 in 8auc

Go back to Platinum Binding Sites List in 8auc
Platinum binding site 2 out of 2 in the Structure of Peptidoglycan Hydrolase CG1735 From Corynebacterium Glutamicum, Trigonal Crystal Form


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structure of Peptidoglycan Hydrolase CG1735 From Corynebacterium Glutamicum, Trigonal Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt701

b:101.0
occ:1.00
NH2 B:ARG68 2.3 67.8 1.0
NH1 B:ARG68 2.5 72.2 1.0
CZ B:ARG68 2.7 77.3 1.0
CB B:MET64 2.8 54.9 1.0
NE B:ARG68 4.0 70.5 1.0
CA B:MET64 4.2 57.9 1.0
CG2 B:THR213 4.4 72.7 1.0
CB A:SER578 4.6 126.7 1.0
C B:MET64 4.8 54.4 1.0
CD2 B:LEU209 4.8 61.2 1.0
N A:SER578 4.9 131.3 1.0

Reference:

Q.Gaday, D.Megrian, G.Carloni, M.Martinez, B.Sokolova, M.Ben Assaya, P.Legrand, S.Brule, A.Haouz, A.M.Wehenkel, P.M.Alzari. Ftsex-Independent Control of Ripa-Mediated Cell Separation in Corynebacteriales. Proc.Natl.Acad.Sci.Usa V. 119 99119 2022.
ISSN: ESSN 1091-6490
PubMed: 36469781
DOI: 10.1073/PNAS.2214599119
Page generated: Fri Apr 7 19:48:34 2023

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