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Platinum in PDB 8ijc: uc(Nmr) Solution Structure of the 1:1 Complex of A Platinum(II) Ligand L1- Transpt Covalently Bound to A G-Quadruplex MYT1L

Platinum Binding Sites:

The binding sites of Platinum atom in the uc(Nmr) Solution Structure of the 1:1 Complex of A Platinum(II) Ligand L1- Transpt Covalently Bound to A G-Quadruplex MYT1L (pdb code 8ijc). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the uc(Nmr) Solution Structure of the 1:1 Complex of A Platinum(II) Ligand L1- Transpt Covalently Bound to A G-Quadruplex MYT1L, PDB code: 8ijc:

Platinum binding site 1 out of 1 in 8ijc

Go back to Platinum Binding Sites List in 8ijc
Platinum binding site 1 out of 1 in the uc(Nmr) Solution Structure of the 1:1 Complex of A Platinum(II) Ligand L1- Transpt Covalently Bound to A G-Quadruplex MYT1L


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of uc(Nmr) Solution Structure of the 1:1 Complex of A Platinum(II) Ligand L1- Transpt Covalently Bound to A G-Quadruplex MYT1L within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:0.4
occ:1.00
PT1 A:Q3Z101 0.0 0.4 1.0
N1 A:Q3Z101 2.0 0.5 1.0
N2 A:Q3Z101 2.0 0.6 1.0
N26 A:Q3Z101 2.0 0.5 1.0
N7 A:DG6 2.4 0.6 1.0
H33 A:Q3Z101 2.5 1.0 1.0
H32 A:Q3Z101 2.5 1.0 1.0
H30 A:Q3Z101 2.5 0.7 1.0
H45 A:Q3Z101 2.5 0.7 1.0
H31 A:Q3Z101 2.5 0.7 1.0
H46 A:Q3Z101 2.5 0.8 1.0
C5 A:DG6 2.7 0.6 1.0
H2' A:DA5 2.9 0.7 1.0
C27 A:Q3Z101 2.9 0.6 1.0
C25 A:Q3Z101 2.9 0.6 1.0
H41 A:Q3Z101 3.0 0.6 1.0
H40 A:Q3Z101 3.0 0.6 1.0
C8 A:DG6 3.1 0.6 1.0
C6 A:DG6 3.1 0.6 1.0
O6 A:DG6 3.3 0.6 1.0
C4 A:DG6 3.5 0.7 1.0
H8 A:DG6 3.6 0.6 1.0
H2'' A:DA5 3.7 0.8 1.0
C2' A:DA5 3.7 0.7 1.0
N9 A:DG6 3.8 0.7 1.0
N1 A:DG6 4.1 0.6 1.0
C28 A:Q3Z101 4.2 0.6 1.0
C24 A:Q3Z101 4.2 0.7 1.0
OP2 A:DG6 4.4 1.2 1.0
H42 A:DC16 4.4 0.6 1.0
H3' A:DA5 4.4 0.7 1.0
N3 A:DG6 4.5 0.7 1.0
C3' A:DA5 4.7 0.7 1.0
N9 A:DA5 4.7 0.8 1.0
C2 A:DG6 4.7 0.7 1.0
H1 A:DG6 4.8 0.7 1.0
C23 A:Q3Z101 4.8 0.7 1.0
C4 A:DA5 4.8 0.9 1.0
C1' A:DA5 4.8 0.7 1.0
O5' A:DG6 4.9 1.2 1.0

Reference:

L.-Y.Liu, Z.-W.Mao. uc(Nmr) Solution Structure of the 1:1 Complex of A Platinum(II) Ligand L1-Transpt Covalently Bound to A G-Quadruplex MYT1L To Be Published.
Page generated: Fri Jul 28 03:55:21 2023

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