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Platinum in PDB 8us4: C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang

Protein crystallography data

The structure of C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang, PDB code: 8us4 was solved by A.Mellouk, T.F.Moraes, C.Calmettes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.99 / 3.15
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 97.975, 149.876, 53.62, 90, 90, 90
R / Rfree (%) 30 / 35

Platinum Binding Sites:

The binding sites of Platinum atom in the C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang (pdb code 8us4). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 5 binding sites of Platinum where determined in the C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang, PDB code: 8us4:
Jump to Platinum binding site number: 1; 2; 3; 4; 5;

Platinum binding site 1 out of 5 in 8us4

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Platinum binding site 1 out of 5 in the C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt601

b:162.3
occ:0.90
SD A:MET436 3.6 72.3 1.0
CG A:MET436 3.7 82.2 1.0
OE1 A:GLN414 3.8 102.4 1.0
NH1 A:ARG412 4.1 121.8 1.0
CB A:MET436 4.3 77.0 1.0
CE A:MET436 5.0 73.6 1.0
CD A:GLN414 5.0 104.5 1.0

Platinum binding site 2 out of 5 in 8us4

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Platinum binding site 2 out of 5 in the C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt602

b:201.4
occ:1.00
NH2 A:ARG288 3.0 121.8 1.0
CG A:MET575 3.6 111.7 1.0
SD A:MET575 3.7 124.8 1.0
CE A:MET575 3.7 116.8 1.0
O A:MET575 3.8 117.9 1.0
NH2 A:ARG286 4.0 120.7 1.0
CZ A:ARG288 4.3 117.3 1.0
NH1 A:ARG286 4.3 118.3 1.0
CZ A:ARG286 4.4 116.3 1.0
CB A:MET575 4.5 94.8 1.0
C A:MET575 4.9 108.0 1.0
NH1 A:ARG288 4.9 112.2 1.0

Platinum binding site 3 out of 5 in 8us4

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Platinum binding site 3 out of 5 in the C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt603

b:103.5
occ:0.70
SD A:MET391 3.1 99.7 1.0
SD A:MET374 3.2 112.2 1.0
CE A:MET374 3.3 88.2 1.0
CG A:MET374 3.9 84.2 1.0
CG A:MET391 4.2 87.6 1.0
NZ A:LYS418 4.3 92.9 1.0
CE A:MET391 4.3 83.3 1.0
CD A:LYS418 4.4 79.2 1.0
CE A:LYS418 4.5 90.6 1.0
CD2 A:LEU470 4.6 86.3 1.0
CB A:MET391 4.6 80.7 1.0

Platinum binding site 4 out of 5 in 8us4

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Platinum binding site 4 out of 5 in the C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt604

b:226.5
occ:0.90
CG A:HIS358 3.4 115.6 1.0
ND1 A:HIS358 3.4 123.7 1.0
CB A:HIS358 3.7 112.0 1.0
CE1 A:HIS358 3.9 112.5 1.0
CD2 A:HIS358 3.9 113.8 1.0
NE2 A:HIS358 4.1 102.6 1.0
CE A:LYS331 4.2 117.4 1.0
NZ A:LYS331 4.5 128.3 1.0
OE1 A:GLN366 4.6 132.4 1.0
CG2 A:VAL368 4.9 94.8 1.0

Platinum binding site 5 out of 5 in 8us4

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Platinum binding site 5 out of 5 in the C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of C2221 Crystal Structure of Tama (Barrel Only) From Pseudomonas Aeruginosa at 3.15 Ang within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt605

b:204.1
occ:1.00
NH1 A:ARG570 4.5 115.0 1.0
CZ A:ARG570 5.0 111.7 1.0

Reference:

A.Mellouk, P.L.Jaouen, L.J.Ruel, M.Le, C.Martini, T.F.Moraes, M.El Bakkouri, P.Lague, E.Boisselier, C.Calmettes. Potra Domains of the Tama Insertase Interact with the Outer Membrane and Modulate Membrane Properties Proc.Natl.Acad.Sci.Usa 2024.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.2402543121
Page generated: Thu Oct 10 11:54:26 2024

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